Name: Gracilibacillus massiliensis Awa-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 159635

Type strain:

Species: Gracilibacillus massiliensis

Strain Designation: Awa-1

Culture col. no.: DSM 29726, CSUR P1441

Strain history: <- S. Khelaifia, Timone Hospital, Marseille, France; Awa-1 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes

NCBI tax ID(s): 1564956 (species)

SI-ID 405943

DSM 29726

Special Collections

DSMZ

Section

When using BacDive for research please cite our paper

Gracilibacillus massiliensis Awa-1 is a mesophilic bacterium that was isolated from alimentary sea salt.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Gracilibacillus*
	Species	**Gracilibacillus massiliensis**
	Full Scientific Name (LPSN)	Gracilibacillus massiliensis Diop et al. 2017

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66479]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #66479]

Culture medium growth

[Ref.: #66479]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66479]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66479]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Oxygen tolerance

obligate aerobe Confidence in %94.9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66479]	Sample type/isolated from	alimentary sea salt
[Ref.: #66479]	Geographic location (country and/or sea, region)	Camargue
[Ref.: #66479]	Country	France
[Ref.: #66479]	Country ISO 3 Code	FRA
[Ref.: #66479]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	-
#Condition	#Saline	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #66479]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66479]	Gracilibacillus sp. Awa-1 partial 16S rRNA gene, strain Awa-1	LN626645	1528	GenBank ENA	1564956 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Gracilibacillus massiliensis Awa-1	GCA_001458115	contig	GenBank ENA	1564956 tax ID	*
[Ref.: #66792]	Gracilibacillus massiliensis Awa-1	2690315889	draft	JGI IMG/M	1564956 tax ID	*

[Ref.: #66479]

GC-content

36.05 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Gracilibacillus massiliensis Awa-1 NCBI: GCA_001458115
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	71.7
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	65.2
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	variable	71.6
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	94.9

Availability in culture collections External links

[Ref.: #66479]

Culture collection no.

DSM 29726, CSUR P1441

[Ref.: #112109]

SI-ID 405943

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbial culturomics unravels the halophilic microbiota repertoire of table salt: description of Gracilibacillus massiliensis sp. nov.	Diop A, Khelaifia S, Armstrong N, Labas N, Fournier PE, Raoult D, Million M	Microb Ecol Health Dis	10.3402/mehd.v27.32049	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66479

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29726

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#112109

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405943.1 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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