Strain identifier
BacDive ID: 159596
Type strain: 
Species: Cellulosimicrobium sp.
Strain Designation: WB02_D5-03-AE
Strain history: <- E. Allen-Vercoe, Univ. Guelph, Ontario, Canada; WB02_D5-03-AE
NCBI tax ID(s): 1871614 (species)
version 8.1 (current version)
General
@ref: 66422
BacDive-ID: 159596
DSM-Number: 105328
keywords: 16S sequence, Bacteria, mesophilic, human pathogen
description: Cellulosimicrobium sp. WB02_D5-03-AE is a mesophilic human pathogen that was isolated from wild boar.
NCBI tax id
- NCBI tax id: 1871614
- Matching level: species
strain history
- @ref: 66422
- history: <- E. Allen-Vercoe, Univ. Guelph, Ontario, Canada; WB02_D5-03-AE
doi: 10.13145/bacdive159596.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Promicromonosporaceae
- genus: Cellulosimicrobium
- species: Cellulosimicrobium sp.
- full scientific name: Cellulosimicrobium Schumann et al. 2001
@ref: 66422
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Micrococcales
family: Promicromonosporaceae
genus: Cellulosimicrobium
species: Cellulosimicrobium sp.
full scientific name: Cellulosimicrobium sp.
strain designation: WB02_D5-03-AE
type strain: no
Culture and growth conditions
culture medium
- @ref: 66422
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
- @ref: 66422
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68379 | 17632 | nitrate | + | reduction |
| 68379 | 4853 | esculin | + | hydrolysis |
| 68379 | 16199 | urea | - | hydrolysis |
| 68379 | 5291 | gelatin | + | hydrolysis |
| 68379 | 17634 | D-glucose | + | fermentation |
| 68379 | 16988 | D-ribose | + | fermentation |
| 68379 | 65327 | D-xylose | + | fermentation |
| 68379 | 16899 | D-mannitol | - | fermentation |
| 68379 | 17306 | maltose | + | fermentation |
| 68379 | 17716 | lactose | - | fermentation |
| 68379 | 17992 | sucrose | + | fermentation |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68379 | gelatinase | + | |
| 68379 | urease | - | 3.5.1.5 |
| 68379 | beta-glucosidase | + | 3.2.1.21 |
| 68379 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
| 68379 | alpha-glucosidase | + | 3.2.1.20 |
| 68379 | beta-galactosidase | + | 3.2.1.23 |
| 68379 | beta-glucuronidase | - | 3.2.1.31 |
| 68379 | alkaline phosphatase | + | 3.1.3.1 |
| 68379 | pyrazinamidase | + | 3.5.1.B15 |
API coryne
| @ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | Control | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66422 | + | + | +/- | + | - | + | + | + | + | - | + | - | + | + | + | - | + | - | + | +/- |
Isolation, sampling and environmental information
isolation
- @ref: 66422
- sample type: wild boar
- geographic location: Stratford, Ontario
- country: Canada
- origin.country: CAN
- continent: North America
isolation source categories
- Cat1: #Host
- Cat2: #Mammals
- Cat3: #Suidae (Pig,Swine)
taxonmaps
- @ref: 69479
- File name: preview.99_256.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_179;97_195;98_218;99_256&stattab=map
- Last taxonomy: Cellulosimicrobium
- 16S sequence: MN537484
- Sequence Identity:
- Total samples: 5475
- soil counts: 1873
- aquatic counts: 417
- animal counts: 1680
- plant counts: 1505
Safety information
risk assessment
- @ref: 66422
- pathogenicity human: yes, in single cases
- pathogenicity animal: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 66422
- description: Cellulosimicrobium sp. strain DSM 105328 16S ribosomal RNA gene, partial sequence
- accession: MN537484
- length: 1425
- database: ena
- NCBI tax ID: 1871614
External links
@ref: 66422
culture collection no.: DSM 105328
straininfo link
- @ref: 112072
- straininfo: 398617
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66422 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-105328 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105328) | |
| 68379 | Automatically annotated from API Coryne | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 112072 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398617.1 |