Strain identifier
BacDive ID: 159345
Type strain: 
Species: Staphylococcus cohnii
Strain Designation: McC-251-APC-3A2
Strain history: <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany;
NCBI tax ID(s): 29382 (species)
version 8.1 (current version)
General
@ref: 66168
BacDive-ID: 159345
DSM-Number: 107449
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive
description: Staphylococcus cohnii McC-251-APC-3A2 is a mesophilic, Gram-positive bacterium that was isolated from feces; pig, 10 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli protein.
NCBI tax id
- NCBI tax id: 29382
- Matching level: species
strain history
- @ref: 66168
- history: <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany;
doi: 10.13145/bacdive159345.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Staphylococcaceae
- genus: Staphylococcus
- species: Staphylococcus cohnii
- full scientific name: Staphylococcus cohnii Schleifer and Kloos 1975 (Approved Lists 1980)
@ref: 66168
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Staphylococcaceae
genus: Staphylococcus
species: Staphylococcus cohnii
full scientific name: Staphylococcus cohnii Schleifer and Kloos 1975
strain designation: McC-251-APC-3A2
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 66168 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
| 66168 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
culture temp
- @ref: 66168
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.816 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 66168
- sample type: feces; pig, 10 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli (APC) protein
- geographic location: Kranzberg (Bavaria)
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
| #Host | #Mammals | #Suidae (Pig,Swine) |
taxonmaps
- @ref: 69479
- File name: preview.99_1035.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_3;97_3;98_3;99_1035&stattab=map
- Last taxonomy: Staphylococcus
- 16S sequence: MN537537
- Sequence Identity:
- Total samples: 759
- soil counts: 26
- aquatic counts: 20
- animal counts: 679
- plant counts: 34
Sequence information
16S sequences
- @ref: 66168
- description: Staphylococcus cohnii strain DSM 107449 16S ribosomal RNA gene, partial sequence
- accession: MN537537
- length: 1502
- database: ena
- NCBI tax ID: 29382
Genome sequences
- @ref: 66792
- description: Staphylococcus sp. McC-251-APC-3A2 strain McC-251-APC-3A2 (aerob) strain McC-251-APC-3A2 (aerob) strain McC-251-APC-3A2 (aerob)
- accession: 2606623.3
- assembly level: wgs
- database: patric
- NCBI tax ID: 2606623
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 88.148 | no |
| gram-positive | yes | 90.492 | no |
| anaerobic | no | 99.282 | no |
| aerobic | yes | 90.678 | no |
| halophile | yes | 97.292 | no |
| spore-forming | no | 90.989 | no |
| glucose-util | yes | 90.843 | no |
| flagellated | no | 91.816 | no |
| thermophile | no | 99.688 | yes |
| glucose-ferment | yes | 84.911 | no |
External links
@ref: 66168
culture collection no.: DSM 107449
straininfo link
- @ref: 111844
- straininfo: 408162
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66168 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-107449 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107449) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 111844 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID408162.1 |