Archive BacDiveID:10.13145/bacdive159345.20250331.9.3

Strain identifier

BacDive ID: 159345

Type strain:

Species: Staphylococcus cohnii

Strain Designation: McC-251-APC-3A2

Strain history: <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany;

NCBI tax ID(s): 29382 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 66168

BacDive-ID: 159345

DSM-Number: 107449

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Staphylococcus cohnii McC-251-APC-3A2 is a mesophilic bacterium that was isolated from feces; pig, 10 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli protein.

NCBI tax id

NCBI tax id: 29382
Matching level: species

strain history

@ref: 66168
history: <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany;

doi: 10.13145/bacdive159345.20250331.9.3

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/bacillota
domain: Bacteria
phylum: Bacillota
class: Bacilli
order: Caryophanales
family: Staphylococcaceae
genus: Staphylococcus
species: Staphylococcus cohnii
full scientific name: Staphylococcus cohnii Schleifer and Kloos 1975 (Approved Lists 1980)

@ref: 66168

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Staphylococcaceae

genus: Staphylococcus

species: Staphylococcus cohnii

full scientific name: Staphylococcus cohnii Schleifer and Kloos 1975

strain designation: McC-251-APC-3A2

type strain: no

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
66168	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	yes	https://mediadive.dsmz.de/medium/92	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
66168	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	yes	https://mediadive.dsmz.de/medium/693	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@ref: 66168
growth: positive
type: growth
temperature: 37

Isolation, sampling and environmental information

isolation

@ref: 66168
sample type: feces; pig, 10 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli (APC) protein
geographic location: Kranzberg (Bavaria)
country: Germany
origin.country: DEU
continent: Europe

isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

taxonmaps

@ref: 69479
File name: preview.99_1035.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_3;97_3;98_3;99_1035&stattab=map
Last taxonomy: Staphylococcus
16S sequence: MN537537
Sequence Identity:
Total samples: 759
soil counts: 26
aquatic counts: 20
animal counts: 679
plant counts: 34

Sequence information

16S sequences

@ref: 66168
description: Staphylococcus cohnii strain DSM 107449 16S ribosomal RNA gene, partial sequence
accession: MN537537
length: 1502
database: nuccore
NCBI tax ID: 29382

Genome sequences

@ref: 66792
description: Staphylococcus sp. McC-251-APC-3A2 strain McC-251-APC-3A2 (aerob) strain McC-251-APC-3A2 (aerob) strain McC-251-APC-3A2 (aerob)
accession: 2606623.3
assembly level: wgs
database: patric
NCBI tax ID: 2606623

Genome-based predictions

predictions

@ref	model	trait	description	prediction	confidence	training_data
125438	gram-positive	gram-positive	Positive reaction to Gram-staining	yes	80.465	no
125438	anaerobic	anaerobic	Ability to grow under anoxygenic conditions (including facultative anaerobes)	no	97.694	no
125438	spore-forming	spore-forming	Ability to form endo- or exospores	no	73.034	no
125438	aerobic	aerobic	Ability to grow under oxygenic conditions (including facultative aerobes)	yes	63.542	no
125438	thermophile	thermophilic	Ability to grow at temperatures above or equal to 45°C	no	95.5	yes
125438	motile2+	flagellated	Ability to perform flagellated movement	no	80	no
125439	BacteriaNet	spore_formation	Ability to form endo- or exospores	no	56.1
125439	BacteriaNet	motility	Ability to perform movement	yes	54
125439	BacteriaNet	gram_stain	Reaction to gram-staining	positive	82
125439	BacteriaNet	oxygen_tolerance	Oxygenic conditions needed for growth	facultative anaerobe	82.8

External links

@ref: 66168

culture collection no.: DSM 107449

straininfo link

@ref: 111844
straininfo: 408162

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
66168	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-107449	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107449)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/
111844	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID408162.1
125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann	Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets	10.1101/2024.08.12.607695
125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy	deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1	https://github.com/GenomeNet/deepG