Strain identifier
BacDive ID: 159186
Type strain: 
Species: Thermosulfurimonas marina
Strain Designation: SU872
Strain history: <- A. Slobodkin, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; SU872 <- Slobodkin A {2015}
NCBI tax ID(s): 2047767 (species)
version 8.1 (current version)
General
@ref: 66009
BacDive-ID: 159186
DSM-Number: 104922
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, thermophilic, Gram-negative
description: Thermosulfurimonas marina SU872 is an anaerobe, thermophilic, Gram-negative bacterium that was isolated from sediment of shallow-sea hydrothermal vent.
NCBI tax id
- NCBI tax id: 2047767
- Matching level: species
strain history
- @ref: 66009
- history: <- A. Slobodkin, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; SU872 <- Slobodkin A {2015}
doi: 10.13145/bacdive159186.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/thermodesulfobacteriota
- domain: Bacteria
- phylum: Thermodesulfobacteriota
- class: Thermodesulfobacteria
- order: Thermodesulfobacteriales
- family: Thermodesulfobacteriaceae
- genus: Thermosulfurimonas
- species: Thermosulfurimonas marina
- full scientific name: Thermosulfurimonas marina Frolova et al. 2019
@ref: 66009
domain: Bacteria
phylum: Thermodesulfobacteria
class: Thermodesulfobacteria
order: Thermodesulfobacteriales
family: Thermodesulfobacteriaceae
genus: Thermosulfurimonas
species: Thermosulfurimonas marina
full scientific name: Thermosulfurimonas marina Frolova et al. 2019
strain designation: SU872
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.994
Culture and growth conditions
culture medium
- @ref: 66009
- name: THERMOSULFURIMONAS MEDIUM (DSMZ Medium 1210a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1210a
- composition: Name: THERMOSULFURIMONAS MEDIUM (DSMZ Medium 1210a; with strain-specific modifications) Composition: NaCl 17.9462 g/l MgCl2 x 6 H2O 3.98804 g/l Na2S2O3 x 5 H2O 3.48953 g/l KNO3 0.997009 g/l Na2CO3 0.997009 g/l (NH4)2SO4 0.498504 g/l KH2PO4 0.329013 g/l KCl 0.329013 g/l CaCl2 x 2 H2O 0.329013 g/l Yeast extract 0.199402 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Nicotinic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range | confidence |
|---|---|---|---|---|---|
| 66009 | positive | growth | 70 | thermophilic | |
| 69480 | thermophilic | 99.999 |
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: anaerobe
- confidence: 99.226
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.983 |
| 69481 | no | 99 |
Isolation, sampling and environmental information
isolation
- @ref: 66009
- sample type: sediment of shallow-sea hydrothermal vent
- geographic location: Sakhalin Oblast, Sea of Okhotsk, near Kunashir Island
- country: Russia
- origin.country: RUS
- continent: Europe
- latitude: 44.4911
- longitude: 146.104
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Hydrothermal vent |
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
Sequence information
16S sequences
- @ref: 66009
- description: Thermosulfurimonas sp. SU872 16S ribosomal RNA gene, partial sequence
- accession: KY953157
- length: 1537
- database: ena
- NCBI tax ID: 2047767
Genome sequences
- @ref: 66792
- description: Thermosulfurimonas marina SU872
- accession: GCA_012317585
- assembly level: complete
- database: ncbi
- NCBI tax ID: 2047767
GC content
- @ref: 66009
- GC-content: 54.9
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 99 | no |
| motile | yes | 90.614 | no |
| flagellated | no | 89.245 | no |
| gram-positive | no | 99.544 | no |
| anaerobic | yes | 99.661 | no |
| aerobic | no | 99.501 | no |
| halophile | no | 78.023 | no |
| spore-forming | no | 95.337 | no |
| glucose-util | no | 57.616 | no |
| thermophile | yes | 100 | yes |
| glucose-ferment | no | 85.813 | no |
External links
@ref: 66009
culture collection no.: DSM 104922, VKM B-3177
straininfo link
- @ref: 111689
- straininfo: 398296
literature
- topic: Genetics
- Pubmed-ID: 32665083
- title: Complete genome sequence of Thermosulfurimonas marina SU872(T), an anaerobic thermophilic chemolithoautotrophic bacterium isolated from a shallow marine hydrothermal vent.
- authors: Allioux M, Jebbar M, Slobodkina G, Slobodkin A, Moalic Y, Frolova A, Shao Z, Alain K
- journal: Mar Genomics
- DOI: 10.1016/j.margen.2020.100800
- year: 2020
- mesh: Bacteria/*genetics/metabolism, *Genome, Bacterial, Hydrothermal Vents/*microbiology, Nitrogen/metabolism, Sulfur/metabolism, Whole Genome Sequencing
- topic2: Metabolism
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66009 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-104922 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104922) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 111689 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398296.1 |