Strain identifier

BacDive ID: 159076

Type strain: No

Species: Enterococcus cecorum

Strain Designation: WCA-380-WT-3C

Strain history: <- D. Wylensek, TU Munich, Freising-Weihenstephan, Germany; WCA-380-WT-3C

NCBI tax ID(s): 44008 (species)

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General

@ref: 65899

BacDive-ID: 159076

DSM-Number: 100908

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, human pathogen

description: Enterococcus cecorum WCA-380-WT-3C is a mesophilic human pathogen that was isolated from feces; pig, 8 weeks old, wild type.

NCBI tax id

  • NCBI tax id: 44008
  • Matching level: species

strain history

  • @ref: 65899
  • history: <- D. Wylensek, TU Munich, Freising-Weihenstephan, Germany; WCA-380-WT-3C

doi: 10.13145/bacdive159076.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Enterococcaceae
  • genus: Enterococcus
  • species: Enterococcus cecorum
  • full scientific name: Enterococcus cecorum (Devriese et al. 1983) Williams et al. 1989

  • synonyms

    • @ref: 20215
    • synonym: Streptococcus cecorum

@ref: 65899

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Enterococcaceae

genus: Enterococcus

species: Enterococcus cecorum

full scientific name: Enterococcus cecorum (Devriese et al. 1983) Williams et al. 1989

strain designation: WCA-380-WT-3C

type strain: no

Culture and growth conditions

culture medium

  • @ref: 65899
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

  • @ref: 65899
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838129016arginine-hydrolysis
6838116988D-ribose+builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose+builds acid from
6838127082trehalose+builds acid from
6838116634raffinose+builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin+builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan-builds acid from
6838117306maltose+builds acid from
6838128053melibiose+builds acid from
683816731melezitose+builds acid from
68381320055methyl beta-D-glucopyranoside+builds acid from
6838116443D-tagatose+builds acid from
6838116199urea-hydrolysis

enzymes

@refvalueactivityec
68381urease-3.5.1.5
68381beta-mannosidase+3.2.1.25
68381glycyl tryptophan arylamidase+
68381N-acetyl-beta-glucosaminidase+3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase+3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase-
68381alkaline phosphatase+3.1.3.1
68381alpha-galactosidase+3.2.1.22
68381beta-glucuronidase+3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase-3.5.3.6

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
65899-++++++--++++--+--+-++---++++++-
65899-++++++--++++--++-+-++---++++++-

Isolation, sampling and environmental information

isolation

  • @ref: 65899
  • sample type: feces; pig, 8 weeks old, wild type
  • geographic location: Kranzberg (Bavaria)
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Host#Mammals#Suidae (Pig,Swine)

taxonmaps

  • @ref: 69479
  • File name: preview.99_2966.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_13;96_1561;97_1865;98_2290;99_2966&stattab=map
  • Last taxonomy: Enterococcus cecorum subclade
  • 16S sequence: MN537442
  • Sequence Identity:
  • Total samples: 41215
  • soil counts: 1785
  • aquatic counts: 4501
  • animal counts: 34006
  • plant counts: 923

Safety information

risk assessment

  • @ref: 65899
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 65899
  • description: Enterococcus cecorum strain DSM 100908 16S ribosomal RNA gene, partial sequence
  • accession: MN537442
  • length: 1499
  • database: ena
  • NCBI tax ID: 44008

Genome sequences

  • @ref: 66792
  • description: Enterococcus cecorum WCA-380-WT-3C
  • accession: GCA_012843815
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 44008

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno95.107no
flagellatedno96.379no
gram-positiveyes92.124no
anaerobicno89.877no
aerobicno97.966no
halophileyes75.975no
spore-formingno90.839no
glucose-utilyes91.048no
thermophileno94.848yes
glucose-fermentyes87.968no

External links

@ref: 65899

culture collection no.: DSM 100908

straininfo link

  • @ref: 111590
  • straininfo: 403904

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65899Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100908Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100908)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68381Automatically annotated from API rID32STR
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
111590Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID403904.1