Enterococcus cecorum (DSM 100908, WCA-380-WT-3C)

Name: Enterococcus cecorum (DSM 100908, WCA-380-WT-3C)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159076

Type strain

Strain Designation WCA-380-WT-3C

Culture col. no. DSM 100908 WCA-380-WT-3C

NCBI tax ID(s) 44008

Special Collections DSMZ Pig DZIF

History <- D. Wylensek, TU Munich, Freising-Weihenstephan, Germany; WCA-380-WT-3C

Links

Enterococcus cecorum WCA-380-WT-3C is a bacterium that was isolated from feces; pig, 8 weeks old, wild type.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 403904

DSM 100908

@ref 20215

Last LPSN update 2026-02-09 11:38:30

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Enterococcaceae

Genus Enterococcus

Species Enterococcus cecorum

Full scientific name Enterococcus cecorum (Devriese et al. 1983) Williams et al. 1989

Synonyms (1)

Streptococcus cecorum

BacDive ID	Other strains from **Enterococcus cecorum** (9)	Type strain
5321	E. cecorum A60, A 60, DSM 20682, ATCC 43198, NCDO 2674, ... (type strain)
5322	E. cecorum A29, DSM 20683, NCDO 2669
135471	E. cecorum S593, CIP 105043, CCUG 27881
138144	E. cecorum S529, CIP 105021, CCUG 27885
139778	E. cecorum AC 1501, DSM 11364
144958	E. cecorum
145203	E. cecorum CCUG 27884
150064	E. cecorum CCUG 38939
160189	E. cecorum Cla-CZ-2, DSM 109010

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	positive	91.601

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65899	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
65899	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	microaerophile	97.5

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68381	40585 ChEBI	alpha-cyclodextrin	+	builds acid from	from API rID32STR
68381	29016 ChEBI	arginine	-	hydrolysis	from API rID32STR
68381	18333 ChEBI	D-arabitol	-	builds acid from	from API rID32STR
68381	16899 ChEBI	D-mannitol	-	builds acid from	from API rID32STR
68381	16988 ChEBI	D-ribose	+	builds acid from	from API rID32STR
68381	16443 ChEBI	D-tagatose	+	builds acid from	from API rID32STR
68381	28087 ChEBI	glycogen	-	builds acid from	from API rID32STR
68381	606565 ChEBI	hippurate	-	hydrolysis	from API rID32STR
68381	30849 ChEBI	L-arabinose	-	builds acid from	from API rID32STR
68381	17716 ChEBI	lactose	+	builds acid from	from API rID32STR
68381	17306 ChEBI	maltose	+	builds acid from	from API rID32STR
68381	6731 ChEBI	melezitose	+	builds acid from	from API rID32STR
68381	28053 ChEBI	melibiose	+	builds acid from	from API rID32STR
68381	320055 ChEBI	methyl beta-D-glucopyranoside	+	builds acid from	from API rID32STR
68381	27941 ChEBI	pullulan	-	builds acid from	from API rID32STR
68381	16634 ChEBI	raffinose	+	builds acid from	from API rID32STR
68381	30911 ChEBI	sorbitol	-	builds acid from	from API rID32STR
68381	17992 ChEBI	sucrose	+	builds acid from	from API rID32STR
68381	27082 ChEBI	trehalose	+	builds acid from	from API rID32STR
68381	16199 ChEBI	urea	-	hydrolysis	from API rID32STR

Enzymes

@ref	Value	Activity	Ec
68381	Alanyl-Phenylalanyl-Proline arylamidase	-		from API rID32STR
68381	alkaline phosphatase	+	3.1.3.1	from API rID32STR
68381	alpha-galactosidase	+	3.2.1.22	from API rID32STR
68381	arginine dihydrolase	-	3.5.3.6	from API rID32STR
68381	beta-galactosidase	+	3.2.1.23	from API rID32STR
68381	beta-glucosidase	+	3.2.1.21	from API rID32STR
68381	beta-glucuronidase	+	3.2.1.31	from API rID32STR
68381	beta-mannosidase	+	3.2.1.25	from API rID32STR
68381	glycyl tryptophan arylamidase	+		from API rID32STR
68381	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API rID32STR
68381	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32STR
68381	urease	-	3.5.1.5	from API rID32STR

API rID32STR

@ref	ADH (Arg)	beta GLU	beta GAR	beta GUR	alpha GAL	PAL	RIB	MAN	SOR	LAC	TRE	RAF	SAC	LARA	DARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	HIP	GLYG	PUL	MAL	MEL	MLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	TAG	beta MAN	URE
65899	-	+	+	+	+	+	+	-	-	+	+	+	+	-	-	+	-	-	+	-	+	+	-	-	-	+	+	+	+	+	+	-
65899	-	+	+	+	+	+	+	-	-	+	+	+	+	-	-	+	+	-	+	-	+	+	-	-	-	+	+	+	+	+	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
65899	feces; pig, 8 weeks old, wild type	Kranzberg (Bavaria)	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence MN537442 (>99% sequence identity) for Enterococcus cecorum subclade from Microbeatlas

Aquatic Samples	4501
Soil Samples	1785
Animal Samples	34006
Plant Samples	923
Total Samples	41215

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
65899	yes, in single cases	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1284381v1 assembly for Enterococcus cecorum WCA-380-WT-3C	contig	GCA_012843815	44008.94	44008	61.57

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65899	Enterococcus cecorum strain DSM 100908 16S ribosomal RNA gene, partial sequence	MN537442	1499		44008

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Enterococcus cecorum WCA-380-WT-3C
NCBI: GCA_012843815

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	72.00	no
125439	motility	BacteriaNetⓘ	no	57.90	no
125439	gram_stain	BacteriaNetⓘ	positive	84.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	97.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Enterococcus cecorum WCA-380-WT-3C
NCBI: GCA_012843815.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.60	no
125438	anaerobic	anaerobicⓘ	no	85.89	no
125438	aerobic	aerobicⓘ	no	96.69	no
125438	spore-forming	spore-formingⓘ	no	77.41	no
125438	thermophilic	thermophileⓘ	no	96.38	no
125438	flagellated	motile2+ⓘ	no	82.33	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65899	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100908
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68381	Automatically annotated from API rID32STR .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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