Strain identifier

BacDive ID: 159040

Type strain: No

Species: Rhodococcus coprophilus

Strain Designation: WB03-B01-AE

Strain history: <- E. Allen-Vercoe, Univ. Guelph, Ontario, Canada;

NCBI tax ID(s): 38310 (species)

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General

@ref: 65863

BacDive-ID: 159040

DSM-Number: 105337

keywords: 16S sequence, mesophilic

description: Rhodococcus coprophilus WB03-B01-AE is a mesophilic prokaryote that was isolated from wild boar.

NCBI tax id

  • NCBI tax id: 38310
  • Matching level: species

strain history

  • @ref: 65863
  • history: <- E. Allen-Vercoe, Univ. Guelph, Ontario, Canada;

doi: 10.13145/bacdive159040.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • genus: Rhodococcus
  • species: Rhodococcus coprophilus
  • full scientific name: Rhodococcus coprophilus Rowbotham and Cross 1979 (Approved Lists 1980)

@ref: 65863

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Nocardiaceae

genus: Rhodococcus

species: Rhodococcus coprophilus

full scientific name: Rhodococcus coprophilus Rowbotham and Cross 1979 emend. Nouioui et al. 2018

strain designation: WB03-B01-AE

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
65863TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
65863BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water

culture temp

  • @ref: 65863
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
65863+-------+-----------

Isolation, sampling and environmental information

isolation

  • @ref: 65863
  • sample type: wild boar
  • geographic location: Stratford, Ontario
  • country: Canada
  • origin.country: CAN
  • continent: North America
  • latitude: 43.3667
  • longitude: -80.9833

isolation source categories

  • Cat1: #Host
  • Cat2: #Mammals
  • Cat3: #Suidae (Pig,Swine)

taxonmaps

  • @ref: 69479
  • File name: preview.99_838.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_14;97_579;98_666;99_838&stattab=map
  • Last taxonomy: Rhodococcus coprophilus subclade
  • 16S sequence: MN537491
  • Sequence Identity:
  • Total samples: 2004
  • soil counts: 872
  • aquatic counts: 548
  • animal counts: 511
  • plant counts: 73

Safety information

risk assessment

  • @ref: 65863
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 65863
  • description: Rhodococcus coprophilus strain DSM 105337 16S ribosomal RNA gene, partial sequence
  • accession: MN537491
  • length: 1418
  • database: ena
  • NCBI tax ID: 38310

External links

@ref: 65863

culture collection no.: DSM 105337

straininfo link

  • @ref: 111554
  • straininfo: 405126

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65863Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-105337Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105337)
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
111554Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405126.1