Rhodococcus coprophilus (DSM 105337, WB03-B01-AE)

Name: Rhodococcus coprophilus (DSM 105337, WB03-B01-AE)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159040

Type strain

Strain Designation WB03-B01-AE

Culture col. no. DSM 105337 WB03-B01-AE

NCBI tax ID(s) 38310

Special Collections DSMZ Pig DZIF

History DSMZ <- E. Allen-Vercoe, Univ. Guelph, Ontario, Canada;

Links

Rhodococcus coprophilus WB03-B01-AE is a bacterium that was isolated from wild boar.

16S sequence Bacteria

Name and taxonomic classification

SI-ID 405126

DSM 105337

@ref 20215

Last LPSN update 2026-05-29 08:44:06

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Nocardiaceae

Genus Rhodococcus

Species Rhodococcus coprophilus

Full scientific name Rhodococcus coprophilus Rowbotham and Cross 1979 (Approved Lists 1980)

BacDive ID	Other strains from **Rhodococcus coprophilus** (14)	Type strain
10836	R. coprophilus N 744, A-0200, N744, 687, DSM 43347, ATCC ... (type strain)
10835	R. coprophilus N 650, DSM 43339, CIP 104628, CUB 628, CCUG ...
10837	R. coprophilus 34G12, DSM 43447
10838	R. coprophilus 81NKrauth, 81N_Krauth, DSM 43591
10839	R. coprophilus DSM 44751
10840	R. coprophilus A747 Lacey, DSM 46034, CIP 104657, CUB 415, ...
104261	R. coprophilus STI07416, CUB 670
104262	R. coprophilus STI07413(IMET), FBAW28, CUB 118
104264	R. coprophilus STI07417, CUB 671
104265	R. coprophilus STI07418, CUB 672
136330	R. coprophilus CIP 104639, CCUG 23571
144206	R. coprophilus CCUG 23605
145161	R. coprophilus CCUG 27780
159041	R. coprophilus BL-253-APC-6A1W, DSM 106145

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65863	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
65863	BHI MEDIUM (DSMZ Medium 215)		Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
65863	positive	growth	28

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68369	gelatinase	-		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
65863	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
65863	wild boar	Stratford, Ontario	Canada	CAN	North America	43.3667	-80.9833 43.3667/-80.9833

Taxonmaps

69479

Global distribution of 16S sequence MN537491 (>99% sequence identity) for Rhodococcus coprophilus subclade from Microbeatlas

Aquatic Samples	548
Soil Samples	872
Animal Samples	511
Plant Samples	73
Total Samples	2004

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
65863	1	Risk group (German classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65863	Rhodococcus coprophilus strain DSM 105337 16S ribosomal RNA gene, partial sequence	MN537491	1418		38310

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65863	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105337
#68369	Automatically annotated from API 20NE .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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