Strain identifier
BacDive ID: 159009
Type strain: 
Species: Micromonospora sp.
Strain Designation: S 2903
Strain history: <- N. Sahin, Ondokuz Mayis Univ., Dept. of Biology, Samsun, Turkey; S 2903 <- M. Camas
NCBI tax ID(s): 1876 (species)
General
@ref: 65832
BacDive-ID: 159009
DSM-Number: 45687
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Micromonospora sp. S 2903 is a mesophilic bacterium that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 1876
- Matching level: species
strain history
- @ref: 65832
- history: <- N. Sahin, Ondokuz Mayis Univ., Dept. of Biology, Samsun, Turkey; S 2903 <- M. Camas
doi: 10.13145/bacdive159009.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micromonosporales
- family: Micromonosporaceae
- genus: Micromonospora
- species: Micromonospora sp.
- full scientific name: Micromonospora Ørskov 1923 (Approved Lists 1980)
synonyms
@ref synonym 20215 Verrucosispora 20215 Xiangella 20215 Jishengella
@ref: 65832
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Micromonosporales
family: Micromonosporaceae
genus: Micromonospora
species: Micromonospora sp.
full scientific name: Micromonospora sp.
strain designation: S 2903
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 65832 | N-Z-AMINE-MEDIUM (DSMZ Medium 554) | yes | https://mediadive.dsmz.de/medium/554 | Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water |
| 65832 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf |
culture temp
- @ref: 65832
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 65832
- sample type: marine sediment
- geographic location: Karadeniz
- country: Turkey
- origin.country: TUR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
Sequence information
16S sequences
- @ref: 65832
- description: Micromonospora sp. S2903 16S ribosomal RNA gene, partial sequence
- accession: JN989305
- length: 1460
- database: ena
- NCBI tax ID: 1450148
Genome sequences
- @ref: 66792
- description: Micromonospora sp. S2903
- accession: 1128668.3
- assembly level: wgs
- database: patric
- NCBI tax ID: 1450148
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 93.631 | no |
| flagellated | no | 98.321 | no |
| gram-positive | yes | 89.739 | no |
| anaerobic | no | 98.602 | no |
| aerobic | yes | 92.168 | no |
| halophile | no | 95.994 | no |
| spore-forming | yes | 84.88 | no |
| thermophile | no | 98.036 | yes |
| glucose-util | yes | 88.624 | no |
| glucose-ferment | no | 92.848 | no |
External links
@ref: 65832
culture collection no.: DSM 45687
straininfo link
- @ref: 111525
- straininfo: 402577
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 65832 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45687 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45687) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 111525 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402577.1 |