Strain identifier

BacDive ID: 158974

Type strain: No

Species: Eggerthella lenta

Strain Designation: CC8/2 BHI2

Strain history: <- J. Bisanz and P. J. Turnbaugh, University of California, San Francisco, USA; CC8/2 BHI2

NCBI tax ID(s): 84112 (species)

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General

@ref: 65797

BacDive-ID: 158974

DSM-Number: 110916

keywords: genome sequence, Bacteria, anaerobe, human pathogen

description: Eggerthella lenta CC8/2 BHI2 is an anaerobe human pathogen that was isolated from Colon Biopsy .

NCBI tax id

  • NCBI tax id: 84112
  • Matching level: species

strain history

  • @ref: 65797
  • history: <- J. Bisanz and P. J. Turnbaugh, University of California, San Francisco, USA; CC8/2 BHI2

doi: 10.13145/bacdive158974.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Coriobacteriia
  • order: Eggerthellales
  • family: Eggerthellaceae
  • genus: Eggerthella
  • species: Eggerthella lenta
  • full scientific name: Eggerthella lenta (Eggerth 1935) Wade et al. 1999

  • synonyms

    @refsynonym
    20215Eubacterium lentum
    20215Eggerthella lenta
    20215Bacteroides lentus

@ref: 65797

domain: Bacteria

phylum: Actinobacteria

class: Coriobacteriia

order: Eggerthellales

family: Eggerthellaceae

genus: Eggerthella

species: Eggerthella lenta

full scientific name: Eggerthella lenta (Eggerth 1935) Wade et al. 1999 emend. Maruo et al. 2008 emend. Nouioui et al. 2018

strain designation: CC8/2 BHI2

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
65797BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215; with strain-specific modifications) Composition: Brain heart infusion 37.0 g/l Arginine 10.0 g/l Distilled water
65797COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

  • @ref: 65797
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

oxygen tolerance

  • @ref: 69480
  • oxygen tolerance: anaerobe
  • confidence: 91.645

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836727082trehalose-builds acid from
6836762345L-rhamnose-builds acid from
6836730911sorbitol-builds acid from
6836716634raffinose-builds acid from
683676731melezitose-builds acid from
6836716024D-mannose-builds acid from
6836717057cellobiose-builds acid from
6836717754glycerol-builds acid from
683674853esculin-hydrolysis
683675291gelatin-hydrolysis
6836730849L-arabinose-builds acid from
6836765327D-xylose-builds acid from
6836717814salicin-builds acid from
6836717306maltose-builds acid from
6836717992sucrose-builds acid from
6836717716lactose-builds acid from
6836716899D-mannitol-builds acid from
6836717634D-glucose-builds acid from
6836716199urea-hydrolysis
6836727897tryptophan-energy source
6838016199urea-hydrolysis
6838029016arginine+hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate+degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

@refChebi-IDmetaboliteproduction
6836735581indoleno
6838035581indoleno

metabolite tests

@refChebi-IDmetaboliteindole test
6838035581indole-
6836735581indole-

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase+4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase+3.5.3.6
68380urease-3.5.1.5
68367beta-glucosidase-3.2.1.21
68367gelatinase-
68367urease-3.5.1.5

API 20A

@refINDUREGLUMANLACSACMALSALXYLARAGELESCGLYCELMNEMLZRAFSORRHATRE
65797--------------------

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
65797-+----------+----------------

Isolation, sampling and environmental information

isolation

  • @ref: 65797
  • sample type: Colon Biopsy (Sigmoid Colon)
  • geographic location: Vancouver, British Columbia
  • country: Canada
  • origin.country: CAN
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Infection#Patient#Biopsy
#Host Body-Site#Gastrointestinal tract#Large intestine

Safety information

risk assessment

  • @ref: 65797
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: Eggerthella lenta CC8/2 BHI2
  • accession: GCA_003340075
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 84112

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingyes72.705no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)yes91.645no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no93.923no
69480spore-formingspore-formingAbility to form endo- or exosporesno74.543no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno93.117yes
69480flagellatedmotile2+Ability to perform flagellated movementno74.5no

External links

@ref: 65797

culture collection no.: DSM 110916

straininfo link

  • @ref: 111490
  • straininfo: 406220

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65797Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-110916Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 110916)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68367Automatically annotated from API 20A
68380Automatically annotated from API rID32A
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
111490Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID406220.1