Strain identifier
BacDive ID: 158907
Type strain: 
Species: Anaerotignum faecicola
Strain Designation: KGMB03357
Strain history: <- Jung-Sook Lee, KRIBB
NCBI tax ID(s): 2358141 (species)
version 8.1 (current version)
General
@ref: 65729
BacDive-ID: 158907
DSM-Number: 107953
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, rod-shaped
description: Anaerotignum faecicola KGMB03357 is an anaerobe, mesophilic, rod-shaped bacterium that was isolated from human feces.
NCBI tax id
- NCBI tax id: 2358141
- Matching level: species
strain history
| @ref | history |
|---|---|
| 65729 | <- S.-H. Park, KRIBB; KGMB03357 |
| 67771 | <- Jung-Sook Lee, KRIBB |
doi: 10.13145/bacdive158907.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Lachnospiraceae
- genus: Anaerotignum
- species: Anaerotignum faecicola
- full scientific name: Anaerotignum faecicola Choi et al. 2020
@ref: 65729
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Lachnospiraceae
genus: Anaerotignum
species: Anaerotignum faecicola
full scientific name: Anaerotignum faecicola Choi et al. 2020
strain designation: KGMB03357
type strain: yes
Morphology
cell morphology
| @ref | cell shape | motility | gram stain | confidence |
|---|---|---|---|---|
| 67771 | rod-shaped | no | ||
| 67771 | positive | |||
| 69480 | no | 90.545 | ||
| 69480 | positive | 100 |
Culture and growth conditions
culture medium
- @ref: 65729
- name: PY + X MEDIUM (DSMZ Medium 104b)
- growth: yes
- link: https://mediadive.dsmz.de/medium/104b
- composition: Name: PY + X MEDIUM (DSMZ Medium 104b) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 65729 | positive | growth | 37 | mesophilic |
| 67771 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 67771 | anaerobe | |
| 69480 | anaerobe | 98.863 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.919 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 65729 | human feces | Seoul | Republic of Korea | KOR | Asia |
| 67771 | From human feces, healthy Korean | Republic of Korea | KOR | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
taxonmaps
- @ref: 69479
- File name: preview.99_17201.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_41;96_8833;97_10622;98_13023;99_17201&stattab=map
- Last taxonomy: Anaerotignum faecicola subclade
- 16S sequence: MK439508
- Sequence Identity:
- Total samples: 125994
- soil counts: 609
- aquatic counts: 2136
- animal counts: 122921
- plant counts: 328
Sequence information
16S sequences
- @ref: 65729
- description: Anaerotignum faecicola 16S ribosomal RNA gene, partial sequence
- accession: MK439508
- length: 1535
- database: ena
- NCBI tax ID: 2358141
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Anaerotignum sp. KCTC 15736 | 2358141.3 | wgs | patric | 2358141 |
| 66792 | Anaerotignum faecicola KCTC 15736 | 2843100240 | draft | img | 2358141 |
| 67771 | Anaerotignum faecicola KCTC 15736 | GCA_003865035 | contig | ncbi | 2358141 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 65729 | 47.3 | sequence analysis |
| 67771 | 47.3 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 91.335 | yes |
| gram-positive | yes | 90.77 | yes |
| anaerobic | yes | 99.611 | yes |
| aerobic | no | 98.338 | yes |
| halophile | no | 68.261 | no |
| spore-forming | no | 71.57 | no |
| glucose-util | yes | 76.898 | no |
| flagellated | no | 96.822 | yes |
| thermophile | no | 98.492 | yes |
| glucose-ferment | yes | 53.544 | no |
External links
@ref: 65729
culture collection no.: DSM 107953, KCTC 15736
straininfo link
- @ref: 111426
- straininfo: 398341
literature
- topic: Phylogeny
- Pubmed-ID: 31680219
- title: Anaerotignum faecicola sp. nov., isolated from human faeces.
- authors: Choi SH, Kim JS, Park JE, Lee KC, Eom MK, Oh BS, Yu SY, Kang SW, Han KI, Suh MK, Lee DH, Yoon H, Kim BY, Lee JH, Lee JH, Lee JS, Park SH
- journal: J Microbiol
- DOI: 10.1007/s12275-019-9268-3
- year: 2019
- mesh: Bacterial Typing Techniques, Base Composition, Clostridiales/*classification/genetics/*isolation & purification/physiology, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Feces/*microbiology, Humans, Hydrogen-Ion Concentration, *Microbiota, Peptidoglycan/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seoul, Sequence Analysis, DNA, Temperature
- topic2: Pathogenicity
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 65729 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-107953 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107953) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 111426 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398341.1 |