Name: Anaerotignum faecicola KGMB03357
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158907

Type strain:

Species: Anaerotignum faecicola

Strain Designation: KGMB03357

Culture col. no.: DSM 107953, KCTC 15736

Strain history: <- Jung-Sook Lee, KRIBB

NCBI tax ID(s): 2358141 (species)

SI-ID 398341

DSM 107953

Special Collections

DSMZ
KCTC

Section

Anaerotignum faecicola KGMB03357 is an anaerobe, mesophilic, rod-shaped bacterium that was isolated from human feces.

rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Anaerotignum*
	Species	**Anaerotignum faecicola**
	Full Scientific Name (LPSN)	Anaerotignum faecicola Choi et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive

[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #67771]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65729]

Culture medium

PY + X MEDIUM (DSMZ Medium 104b)

[Ref.: #65729]

Culture medium growth

[Ref.: #65729]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65729]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #65729]			growth	37 °C
[Ref.: #67771]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

anaerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65729]	Sample type/isolated from	human feces
[Ref.: #65729]	Geographic location (country and/or sea, region)	Seoul
[Ref.: #65729]	Country	Republic of Korea
[Ref.: #65729]	Country ISO 3 Code	KOR
[Ref.: #65729]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From human feces, healthy Korean
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MK439508 (>99% sequence identity) for Anaerotignum faecicola subclade from Microbeatlas

Aquatic Samples	2136
Soil Samples	609
Animal Samples	122921
Plant Samples	328
Total Samples	125994

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65729]	Anaerotignum faecicola 16S ribosomal RNA gene, partial sequence	MK439508	1535	GenBank ENA	2358141 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67771]	Anaerotignum faecicola KCTC 15736	GCA_003865035	contig	GenBank ENA	2358141 tax ID
[Ref.: #66792]	Anaerotignum sp. KCTC 15736	2358141.3	wgs	PATRIC	2358141 tax ID	*
[Ref.: #66792]	Anaerotignum faecicola KCTC 15736	2843100240	draft	JGI IMG/M	2358141 tax ID	*

[Ref.: #65729]	GC-content	47.3 mol%	sequence analysis
[Ref.: #67771]	GC-content	47.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Anaerotignum sp. KCTC 15736 PATRIC: 2358141.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Anaerotignum sp. KCTC 15736 PATRIC: 2358141.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	73.832	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	82.563	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	58.5	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	94.047	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.65	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89.477	yes

Availability in culture collections External links

[Ref.: #65729]

Culture collection no.

DSM 107953, KCTC 15736

[Ref.: #111426]

SI-ID 398341

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Anaerotignum faecicola sp. nov., isolated from human faeces.	Choi SH, Kim JS, Park JE, Lee KC, Eom MK, Oh BS, Yu SY, Kang SW, Han KI, Suh MK, Lee DH, Yoon H, Kim BY, Lee JH, Lee JH, Lee JS, Park SH	J Microbiol	10.1007/s12275-019-9268-3	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65729

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107953

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111426

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398341.1 )

* These data were automatically processed and therefore are not curated

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Anaerotignum sp. KCTC 15736

Anaerotignum sp. KCTC 15736

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