Strain identifier
BacDive ID: 158898
Type strain: 
Species: Victivallis lenta
Strain Designation: BBE-744-WT-12
Strain history: B. Abt; DSMZ, Germany; DSM 107290 (=BBE-744-WT-12) <-- T. Clavel; RWTH Aachen, Germany.
NCBI tax ID(s): 2606640 (species)
version 8.1 (current version)
General
@ref: 65720
BacDive-ID: 158898
DSM-Number: 107290
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative
description: Victivallis lenta BBE-744-WT-12 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from Pig, WT, 4 months old, feces.
NCBI tax id
- NCBI tax id: 2606640
- Matching level: species
strain history
| @ref | history |
|---|---|
| 65720 | <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany; BBE-744-WT-12 |
| 67770 | B. Abt; DSMZ, Germany; DSM 107290 (=BBE-744-WT-12) <-- T. Clavel; RWTH Aachen, Germany. |
doi: 10.13145/bacdive158898.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/lentisphaerota
- domain: Bacteria
- phylum: Lentisphaerota
- class: Lentisphaeria
- order: Victivallales
- family: Victivallaceae
- genus: Victivallis
- species: Victivallis lenta
- full scientific name: Victivallis lenta Wylensek et al. 2021
@ref: 65720
domain: Bacteria
phylum: Lentisphaerae
class: Lentisphaeria
order: Victivallales
family: Victivallaceae
genus: Victivallis
species: Victivallis lenta
full scientific name: Victivallis lenta
strain designation: BBE-744-WT-12
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.926
Culture and growth conditions
culture medium
- @ref: 65720
- name: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1203a
- composition: Name: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) Composition: Fastidious Anaerobe Basal Broth 35.4 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 65720 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: anaerobe
- confidence: 99.999
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.978 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 65720 | Pig, WT, 4 months old, feces | Kranzberg (Bavaria) | Germany | DEU | Europe |
| 67770 | Feces of an Aachen minipig in Germany |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
| #Host | #Mammals | #Suidae (Pig,Swine) |
taxonmaps
- @ref: 69479
- File name: preview.99_9007.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_885;96_4259;97_5202;98_6602;99_9007&stattab=map
- Last taxonomy: Victivallis
- 16S sequence: MN537533
- Sequence Identity:
- Total samples: 17275
- soil counts: 126
- aquatic counts: 728
- animal counts: 16400
- plant counts: 21
Sequence information
16S sequences
- @ref: 65720
- description: Victivallis sp. DSM 107290 16S ribosomal RNA gene, partial sequence
- accession: MN537533
- length: 1471
- database: ena
- NCBI tax ID: 2652400
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Victivallis lenta BBE-744-WT-12 | GCA_009695545 | contig | ncbi | 2606640 |
| 66792 | Victivallaceae bacterium BBE-744-WT-12 | 2606640.3 | wgs | patric | 2606640 |
GC content
- @ref: 67770
- GC-content: 59.3
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 90.75 | no |
| gram-positive | no | 94.385 | no |
| anaerobic | yes | 98.254 | no |
| aerobic | no | 95.737 | no |
| halophile | no | 91.298 | no |
| spore-forming | no | 94.501 | no |
| glucose-util | yes | 79.703 | no |
| flagellated | no | 97.025 | no |
| thermophile | no | 99.342 | yes |
| glucose-ferment | no | 52.218 | no |
External links
@ref: 65720
culture collection no.: DSM 107290, JCM 34375
straininfo link
- @ref: 111417
- straininfo: 398370
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 65720 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-107290 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107290) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 111417 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398370.1 |