Strain identifier

BacDive ID: 158824

Type strain: Yes

Species: Paraburkholderia caseinilytica

Strain Designation: HM451

NCBI tax ID(s): 2171978 (species)

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General

@ref: 65588

BacDive-ID: 158824

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped, colony-forming

description: Paraburkholderia caseinilytica HM451 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from forest soil .

NCBI tax id

  • NCBI tax id: 2171978
  • Matching level: species

doi: 10.13145/bacdive158824.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Burkholderiaceae
  • genus: Paraburkholderia
  • species: Paraburkholderia caseinilytica
  • full scientific name: Paraburkholderia caseinilytica Gao et al. 2018

@ref: 65588

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Paraburkholderia

species: Paraburkholderia caseinilytica

strain designation: HM451

type strain: yes

Morphology

cell morphology

  • @ref: 65588
  • gram stain: negative
  • cell length: 1.0-2.1 µm
  • cell width: 0.4-0.8 µm
  • cell shape: rod-shaped

colony morphology

  • @ref: 65588
  • colony color: white
  • colony shape: circular
  • incubation period: 2 days
  • medium used: R2A

Culture and growth conditions

culture medium

@refnamegrowth
65588Trypticase Soy Agar (TSA)yes
65588LB (Luria-Bertani) MEDIUMyes
65588Reasoner's 2A agar (R2A)yes
65588MacConkeyyes

culture temp

@refgrowthtypetemperaturerange
65588positivegrowth4-42
65588positiveoptimum28mesophilic

culture pH

@refabilitytypepHPH range
65588positivegrowth4.5-9.0alkaliphile
65588positiveoptimum5.0-6.0

Physiology and metabolism

oxygen tolerance

  • @ref: 65588
  • oxygen tolerance: aerobe

spore formation

  • @ref: 65588
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
65588NaClpositivegrowth0-4.5 %(w/v)
65588NaClpositiveoptimum0-2.5 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6558817128adipate+carbon source
6558817128adipate+growth
6558827689decanoate+carbon source
6558827689decanoate+growth
6558817057cellobiose+carbon source
6558817057cellobiose+growth
6558815963ribitol-assimilation
6558817108D-arabinose-assimilation
6558818333D-arabitol+carbon source
6558818333D-arabitol+growth
6558815824D-fructose+carbon source
6558815824D-fructose+growth
6558828847D-fucose-assimilation
6558812936D-galactose+carbon source
6558812936D-galactose+growth
6558862318D-lyxose+carbon source
6558862318D-lyxose+growth
6558816899D-mannitol+carbon source
6558816899D-mannitol+growth
6558816024D-mannose+carbon source
6558816024D-mannose+growth
6558816988D-ribose+carbon source
6558816988D-ribose+growth
6558817924D-sorbitol+carbon source
6558817924D-sorbitol+growth
6558865327D-xylose+carbon source
6558865327D-xylose+growth
6558817113erythritol-assimilation
65588esculin ferric citrate+carbon source
65588esculin ferric citrate+growth
6558828066gentiobiose+carbon source
6558828066gentiobiose+growth
6558817234glucose+carbon source
6558817234glucose+fermentation
6558817234glucose+growth
6558828087glycogen+carbon source
6558828087glycogen+growth
6558817268myo-inositol+carbon source
6558817268myo-inositol+growth
6558815443inulin+carbon source
6558815443inulin+growth
6558830849L-arabinose+carbon source
6558830849L-arabinose+growth
6558818403L-arabitol-assimilation
6558818287L-fucose+carbon source
6558818287L-fucose+growth
6558862345L-rhamnose+carbon source
6558862345L-rhamnose+growth
6558865328L-xylose+carbon source
6558865328L-xylose+growth
6558825115malate+carbon source
6558825115malate+growth
6558817306maltose-assimilation
6558828053melibiose-assimilation
65588506227N-acetylglucosamine+carbon source
65588506227N-acetylglucosamine+growth
6558818401phenylacetate+carbon source
6558818401phenylacetate+growth
65588potassium 2-dehydro-D-gluconate+carbon source
65588potassium 2-dehydro-D-gluconate+growth
6558832032potassium gluconate+carbon source
6558832032potassium gluconate+growth
6558816634raffinose-assimilation
6558853258sodium citrate-assimilation
6558817992sucrose-assimilation
6558832528turanose-assimilation

enzymes

@refvalueactivityec
65588acid phosphatase+3.1.3.2
65588alkaline phosphatase+3.1.3.1
65588arginine dihydrolase+3.5.3.6
65588cystine arylamidase+3.4.11.3
65588esterase (C 4)+
65588esterase Lipase (C 8)+
65588leucine arylamidase+3.4.11.1
65588naphthol-AS-BI-phosphohydrolase+
65588urease+3.5.1.5
65588valine arylamidase+
65588beta-glucosidase+3.2.1.21
65588alpha-chymotrypsin-3.4.21.1
65588gelatinase-
65588lipase (C 14)-
65588N-acetyl-beta-glucosaminidase-3.2.1.52
65588trypsin-3.4.21.4
65588alpha-fucosidase-3.2.1.51
65588alpha-galactosidase-3.2.1.22
65588alpha-glucosidase-3.2.1.20
65588alpha-mannosidase-3.2.1.24
65588beta-galactosidase-3.2.1.23
65588beta-glucuronidase-3.2.1.31

Isolation, sampling and environmental information

isolation

  • @ref: 65588
  • sample type: forest soil (acidic)
  • geographic location: Dinghushan Biosphere Reserve, Guangdong Province
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 23.1667
  • longitude: 112.517
  • enrichment culture: R2A
  • enrichment culture duration: 5 days
  • enrichment culture temperature: 28
  • isolation procedure: 10 g soil sample was suspended in 100 ml saline (0.85 % NaCl) and serially diluted

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Soil
#Condition#Acidic

Sequence information

16S sequences

  • @ref: 65588
  • description: 16S rRNA gene sequence
  • accession: MF950896
  • database: nuccore

GC content

  • @ref: 65588
  • GC-content: 65.4
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 65588

culture collection no.: GDMCC 1.1190, LMG 30092

literature

  • topic: Phylogeny
  • Pubmed-ID: 29676723
  • title: Paraburkholderia caseinilytica sp. nov., isolated from the pine and broad-leaf mixed forest soil.
  • authors: Gao ZH, Zhong SF, Lu ZE, Xiao SY, Qiu LH
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002774
  • year: 2018
  • mesh: Bacterial Typing Techniques, Base Composition, Burkholderiaceae/*classification/genetics/isolation & purification, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Forests, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65588Zeng-hong Gao, Shu-fen Zhong, Zu-er Lu, Sen-yang Xiao and Li-hong QiuParaburkholderia caseinilytica sp. nov., isolated from the pine and broad-leaf mixed forest soil10.1099/ijsem.0.002774IJSEM 68: 1963-1968 201829676723