Strain identifier

BacDive ID: 158809

Type strain: Yes

Species: Lelliottia jeotgali

Strain Designation: PFL01

Strain history: J.-H. Lee; Kyung Hee Univ., South Korea; PFL01.

NCBI tax ID(s): 1907578 (species)

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General

@ref: 65572

BacDive-ID: 158809

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, Gram-negative, motile, rod-shaped, colony-forming

description: Lelliottia jeotgali PFL01 is a facultative anaerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from traditional Korean fermented clams .

NCBI tax id

  • NCBI tax id: 1907578
  • Matching level: species

strain history

  • @ref: 67770
  • history: J.-H. Lee; Kyung Hee Univ., South Korea; PFL01.

doi: 10.13145/bacdive158809.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Lelliottia
  • species: Lelliottia jeotgali
  • full scientific name: Lelliottia jeotgali Yuk et al. 2018

  • synonyms

    • @ref: 20215
    • synonym: Lelliottia aquatilis

@ref: 65572

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Lelliottia

species: Lelliottia jeotgali

strain designation: PFL01

type strain: yes

Morphology

cell morphology

  • @ref: 65572
  • gram stain: negative
  • cell length: 1.2-1.6 µm
  • cell width: 0.6-0.7 µm
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 65572
  • colony size: 4.0-5.0 mm
  • colony color: beige
  • colony shape: circular
  • incubation period: 2 days
  • medium used: NA

Culture and growth conditions

culture medium

@refnamegrowth
65572Trypticase Soy Agar (TSA)yes
65572Man-Rogosa-Sharpe agaryes
65572BHIyes
65572LB (Luria-Bertani) MEDIUMyes
65572M17 agaryes
65572Nutrient agar (NA)yes
65572MacConkey agaryes

culture temp

@refgrowthtypetemperaturerange
65572positivegrowth10-45
65572positiveoptimum30mesophilic
65572nogrowth4psychrophilic
65572nogrowth50thermophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
65572positivegrowth5-9alkaliphile
65572positiveoptimum8
65572nogrowth4
65572nogrowth10

Physiology and metabolism

oxygen tolerance

  • @ref: 65572
  • oxygen tolerance: facultative anaerobe

halophily

@refsaltgrowthtested relationconcentrationhalophily level
65572NaClpositivegrowth0-8 %(w/v)
65572NaClpositiveoptimum0.5 %(w/v)slightly halophilic
65572NaClnogrowth9 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
65572168082-dehydro-D-gluconate+builds acid from
65572581435-dehydro-D-gluconate+builds acid from
6557227613amygdalin-builds acid from
6557218305arbutin-builds acid from
6557217057cellobiose+builds acid from
6557215963ribitol-builds acid from
6557217108D-arabinose-builds acid from
6557218333D-arabitol-builds acid from
6557215824D-fructose+builds acid from
6557228847D-fucose-builds acid from
6557212936D-galactose+builds acid from
6557217634D-glucose+builds acid from
6557262318D-lyxose-builds acid from
6557216899D-mannitol+builds acid from
6557216024D-mannose+builds acid from
6557216988D-ribose+builds acid from
6557217924D-sorbitol-builds acid from
6557216443D-tagatose-builds acid from
6557265327D-xylose+builds acid from
6557216813galactitol-builds acid from
6557217113erythritol-builds acid from
655724853esculin+hydrolysis
6557228066gentiobiose+builds acid from
6557224265gluconate+builds acid from
6557217754glycerol+builds acid from
6557228087glycogen-builds acid from
6557217268myo-inositol-builds acid from
6557215443inulin-builds acid from
6557230849L-arabinose+builds acid from
6557218403L-arabitol-builds acid from
6557218287L-fucose-builds acid from
6557262345L-rhamnose+builds acid from
6557217266L-sorbose-builds acid from
6557265328L-xylose-builds acid from
6557217716lactose-builds acid from
6557217306maltose+builds acid from
655726731melezitose-builds acid from
6557228053melibiose+builds acid from
65572320061methyl alpha-D-glucopyranoside-builds acid from
6557243943methyl alpha-D-mannoside-builds acid from
6557274863methyl beta-D-xylopyranoside-builds acid from
65572506227N-acetylglucosamine+builds acid from
6557216634raffinose-builds acid from
6557217814salicin-builds acid from
6557228017starch-builds acid from
6557217992sucrose-builds acid from
6557227082trehalose+builds acid from
6557232528turanose-builds acid from
6557217151xylitol-builds acid from

enzymes

@refvalueactivityec
65572catalase+1.11.1.6
65572cytochrome oxidase-1.9.3.1
65572pyrrolidonyl arylamidase+3.4.19.3
65572beta-galactosidase+3.2.1.23
65572N-acetyl-beta-glucosaminidase+3.2.1.52
65572gamma-glutamyltransferase+2.3.2.2
65572proline-arylamidase+3.4.11.5
65572tyrosine arylamidase+
65572beta-N-acetylgalactosaminidase+
65572alpha-galactosidase+3.2.1.22
65572alkaline phosphatase+3.1.3.1
65572ornithine decarboxylase+4.1.1.17

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentenrichment cultureenrichment culture durationenrichment culture temperature
65572traditional Korean fermented clams (jogae-jeotgal)Sorae port, IncheonRepublic of KoreaKORAsiaNA1 day37
67770Jogae-jeotgal, a traditional Korean fermented clam in InchonRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Seafood
#Host#Invertebrates (Other)#Mollusca
#Engineered#Food production#Fermented

taxonmaps

  • @ref: 69479
  • File name: preview.99_11116.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_78;99_11116&stattab=map
  • Last taxonomy: Enterobacteriaceae
  • 16S sequence: KX709881
  • Sequence Identity:
  • Total samples: 477
  • soil counts: 67
  • aquatic counts: 49
  • animal counts: 316
  • plant counts: 45

Sequence information

16S sequences

  • @ref: 65572
  • description: 16S rRNA gene sequence
  • accession: KX709881
  • database: nuccore

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lelliottia jeotgali PFL012757320903completeimg1907578
67770Lelliottia jeotgali PFL01GCA_002271215completencbi1907578

GC content

  • @ref: 65572
  • GC-content: 55.3
  • method: genome sequence analysis

External links

@ref: 65572

culture collection no.: KCCM 43247, JCM 31901

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny29583116Lelliottia jeotgali sp. nov., isolated from a traditional Korean fermented clam.Yuk KJ, Kim YT, Huh CS, Lee JHInt J Syst Evol Microbiol10.1099/ijsem.0.0027372018Animals, Bacterial Typing Techniques, Base Composition, Bivalvia/*microbiology, DNA, Bacterial/genetics, Enterobacter/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Fermented Foods/*microbiology, Genes, Bacterial, Multilocus Sequence Typing, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seafood/*microbiology, Sequence Analysis, DNATranscriptome
Phylogeny35829834Lelliottia steviae sp. nov. isolated from Stevia rebaudiana Bertoni.Lin J, Huang K, Huang JY, Xiong YR, Wei MM, Xiao N, Gao J, Ding XK, Ma ZY, Sang JH, Kong LX, Hong ZY, Li OArch Microbiol10.1007/s00203-022-03033-22022Bacterial Typing Techniques, DNA, Bacterial/genetics, DNA, Ribosomal, Fatty Acids/analysis, Multilocus Sequence Typing, Nucleic Acid Hybridization, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Stevia/geneticsTranscriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65572Kyung-Jin Yuk, You-Tae Kim, Chul-Sung Huh and Ju-Hoon LeeLelliottia jeotgali sp. nov., isolated from a traditional Korean fermented clam10.1099/ijsem.0.002737IJSEM 68: 1725-1731 201829583116
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/