Strain identifier

BacDive ID: 158805

Type strain: Yes

Species: Dokdonia aurantiaca

Strain Designation: ZOW29

Strain history: <- Chi Nam Seong, Sunchon National Univ.

NCBI tax ID(s): 2136407 (species)

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General

@ref: 65567

BacDive-ID: 158805

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped, colony-forming

description: Dokdonia aurantiaca ZOW29 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from marine plant Zostrea marina.

NCBI tax id

  • NCBI tax id: 2136407
  • Matching level: species

strain history

@refhistory
67770C. N. Seong; Sunchon Natl. Univ., South Korea; ZOW29.
67771<- Chi Nam Seong, Sunchon National Univ.

doi: 10.13145/bacdive158805.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Dokdonia
  • species: Dokdonia aurantiaca
  • full scientific name: Dokdonia aurantiaca Choi et al. 2018

@ref: 65567

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Dokdonia

species: Dokdonia aurantiaca

strain designation: ZOW29

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
65567negative1.76-3.04 µm0.68-0.76 µmrod-shapedno
67771rod-shapedno
67771negative

colony morphology

  • @ref: 65567
  • colony size: 1.5-2 mm
  • colony color: orange
  • colony shape: circular
  • incubation period: 3 days
  • medium used: MA

pigmentation

@refproductionname
65567noflexirubin-type
65567yescarotenoid pigments

Culture and growth conditions

culture medium

@refnamegrowth
65567Nutrient agar (NA)no
65567PCAno
65567Reasoner's 2A agar (R2A)no
65567Marine agar (MA)yes
65567Trypticase Soy Agar (TSA)no

culture temp

@refgrowthtypetemperaturerange
65567positivegrowth10-30
65567positiveoptimum25mesophilic
67770positivegrowth25mesophilic
67771positivegrowth25mesophilic

culture pH

@refabilitytypepH
65567positivegrowth5-8
65567positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
65567aerobe
67771aerobe

spore formation

  • @ref: 65567
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
65567Marine saltspositivegrowth2-7 %(w/v)
65567Marine saltspositiveoptimum4 %(w/v)

observation

@refobservation
67770quinones: MK-6
67771quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6556717128adipate-assimilation
6556758187alginate-hydrolysis
6556722599arabinose-assimilation
6556729016arginine-hydrolysis
6556727689decanoate-assimilation
6556785146carboxymethylcellulose-hydrolysis
65567casein-hydrolysis
6556717029chitin-hydrolysis
6556716991dna-hydrolysis
655674853esculin+hydrolysis
6556728757fructose-builds acid from
6556728260galactose-builds acid from
655675291gelatin+hydrolysis
6556717234glucose-assimilation
6556717234glucose-builds acid from
6556717895L-tyrosine-hydrolysis
6556717716lactose-builds acid from
6556725115malate-assimilation
6556717306maltose-assimilation
6556717306maltose-builds acid from
6556729864mannitol-assimilation
6556729864mannitol-builds acid from
6556737684mannose-assimilation
6556737684mannose-builds acid from
65567506227N-acetylglucosamine-assimilation
6556718401phenylacetate-assimilation
6556732032potassium gluconate-assimilation
6556726546rhamnose-builds acid from
6556753258sodium citrate-assimilation
6556728017starch-hydrolysis
6556717992sucrose-builds acid from
6556727082trehalose-builds acid from
6556753424tween 20+hydrolysis
6556753426tween 80+hydrolysis
6556737166xylan-hydrolysis
6556718222xylose-builds acid from

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
6556717334penicillinyesyes10 Unit (disc)
6556748923erythromycinyesyes15 µg (disc)
6556717698chloramphenicolyesyes30 µg (disc)
6556728001vancomycinyesyes30 µg (disc)
6556728971ampicillinyesyes10 µg (disc)
6556717833gentamicinyesyes10 µg (disc)
6556717076streptomycinyesyes10 µg (disc)
655672637amikacinyesyes30 µg (disc)
655676104kanamycinyesyes30 µg (disc)
65567100147nalidixic acidyesyes30 µg (disc)
6556727902tetracyclineyesyes30 µg (disc)
655678309polymyxin byesyes300 Unit (disc)

metabolite production

@refChebi-IDmetaboliteproduction
6556716136hydrogen sulfideno
6556735581indoleno

enzymes

@refvalueactivityec
65567catalase+1.11.1.6
65567cytochrome oxidase-1.9.3.1
65567acid phosphatase+3.1.3.2
65567alkaline phosphatase+3.1.3.1
65567cystine arylamidase+3.4.11.3
65567esterase (C 4)+
65567esterase Lipase (C 8)+
65567N-acetyl-beta-glucosaminidase+3.2.1.52
65567leucine arylamidase+3.4.11.1
65567naphthol-AS-BI-phosphohydrolase+
65567valine arylamidase+
65567alpha-chymotrypsin-3.4.21.1
65567alpha-fucosidase-3.2.1.51
65567alpha-galactosidase-3.2.1.22
65567beta-galactosidase-3.2.1.23
65567alpha-glucosidase-3.2.1.20
65567beta-glucosidase-3.2.1.21
65567beta-glucuronidase-3.2.1.31
65567lipase (C 14)-
65567alpha-mannosidase-3.2.1.24
65567trypsin-3.4.21.4

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    65567C15:01.5
    65567C17:0 2OH3.4
    65567C13:0 iso2.3
    65567C14:0 iso1.8
    65567C15:0 iso30.6
    65567C16:0 iso6.1
    65567C15:0 iso 3OH3.6
    65567C16:0 iso 3OH8.4
    65567C17:0 iso 3OH13.7
    65567C15:1 anteiso A1.1
    65567C15:0 anteiso5.7
    65567C15:1 iso G17.1
    65567unknown 13.5651
  • type of FA analysis: whole cell analysis
  • incubation medium: MA
  • incubation temperature: 25
  • incubation time: 2
  • software version: Sherlock 6.1
  • library/peak naming table: TSBA6
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment culture
65567marine plant Zostrea marinaSouth SeaRepublic of KoreaKORAsia33.4979126.916MA
67770Seaweed sample collected from the South SeaRepublic of KoreaKORAsia
67771From marine plant, `Zostera marina`South SeaRepublic of KoreaKORAsia33.4979126.916

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Aquatic plant

Sequence information

16S sequences

  • @ref: 65567
  • description: 16S rRNA gene sequence
  • accession: MF614626
  • database: nuccore

GC content

@refGC-contentmethod
6777138.0
6777038thermal denaturation, midpoint method (Tm)

External links

@ref: 65567

culture collection no.: KCTC 52956, JCM 32295

literature

  • topic: Phylogeny
  • Pubmed-ID: 29570445
  • title: Dokdonia aurantiaca sp. nov., isolated from seaweed Zostera marina.
  • authors: Choi S, Kang JW, Kim MS, Yoon JH, Seong CN
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002730
  • year: 2018
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seaweed/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry, Zosteraceae/*microbiology
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65567Seon Choi, Joo Won Kang, Mi Sun Kim, Jung-Hoon Yoo and Chi Nam SeongDokdonia aurantiaca sp. nov., isolated from seaweed Zostera marina10.1099/ijsem.0.002730IJSEM 68: 1697-1701 201829570445
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc