Dokdonia aurantiaca (KCTC 52956, JCM 32295, ZOW29)

Name: Dokdonia aurantiaca (KCTC 52956, JCM 32295, ZOW29)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158805

Type strain

Strain Designation ZOW29

Culture col. no. KCTC 52956 JCM 32295 ZOW29

NCBI tax ID(s) 2136407

Special Collections JCM KCTC Literature strains

History C. N. Seong; Sunchon Natl. Univ., South Korea; ZOW29. <- Chi Nam Seong, Sunchon National Univ.

Links

Dokdonia aurantiaca ZOW29 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from marine plant Zostrea marina.

Gram-negative rod-shaped colony-forming aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 27535

KCTC 52956,JCM 32295

@ref 20215

Last LPSN update 2026-02-09 11:38:25

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Dokdonia

Species Dokdonia aurantiaca

Full scientific name Dokdonia aurantiaca Choi et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
65567	negative	1.76-3.04 µm	0.68-0.76 µm	rod-shaped
67771				rod-shaped
67771	negative

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
65567	1.5-2 mm	orange	circular	3 days	MA

Pigmentation

@ref	Production	Name
65567		flexirubin type pigments
65567		carotenoid pigment

Culture and growth conditions

Culture medium

@ref	Name	Growth
65567	Marine agar (MA)
65567	Nutrient agar (NA)
65567	PCA
65567	Reasoner's 2A agar (R2A)
65567	Trypticase Soy Agar (TSA)

Culture temp

@ref	Growth	Type	Temperature (°C)
65567	positive	growth	10-30
65567	positive	optimum	25
67770	positive	growth	25
67771	positive	growth	25

Culture pH

@ref	Ability	Type	PH
65567	positive	optimum	7
65567	positive	growth	5-8

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
65567	aerobe
67771	aerobe

Spore formation

65567

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65567	Marine salts	positive	growth	2-7 %(w/v)
65567	Marine salts	positive	optimum	4 %(w/v)

Observation

@ref	Observation
67770	quinones: MK-6
67771	quinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65567	17128 ChEBI	adipate	-	assimilation
65567	58187 ChEBI	alginate	-	hydrolysis
65567	22599 ChEBI	arabinose	-	assimilation
65567	29016 ChEBI	arginine	-	hydrolysis
65567	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
65567		casein	-	hydrolysis
65567	17029 ChEBI	chitin	-	hydrolysis
65567	27689 ChEBI	decanoate	-	assimilation
65567	16991 ChEBI	dna	-	hydrolysis
65567	4853 ChEBI	esculin	+	hydrolysis
65567	28757 ChEBI	fructose	-	builds acid from
65567	28260 ChEBI	galactose	-	builds acid from
65567	5291 ChEBI	gelatin	+	hydrolysis
65567	17234 ChEBI	glucose	-	assimilation
65567	17234 ChEBI	glucose	-	builds acid from
65567	17895 ChEBI	L-tyrosine	-	hydrolysis
65567	17716 ChEBI	lactose	-	builds acid from
65567	25115 ChEBI	malate	-	assimilation
65567	17306 ChEBI	maltose	-	assimilation
65567	17306 ChEBI	maltose	-	builds acid from
65567	29864 ChEBI	mannitol	-	assimilation
65567	29864 ChEBI	mannitol	-	builds acid from
65567	37684 ChEBI	mannose	-	assimilation
65567	37684 ChEBI	mannose	-	builds acid from
65567	506227 ChEBI	N-acetylglucosamine	-	assimilation
65567	18401 ChEBI	phenylacetate	-	assimilation
65567	32032 ChEBI	potassium gluconate	-	assimilation
65567	26546 ChEBI	rhamnose	-	builds acid from
65567	53258 ChEBI	sodium citrate	-	assimilation
65567	28017 ChEBI	starch	-	hydrolysis
65567	17992 ChEBI	sucrose	-	builds acid from
65567	27082 ChEBI	trehalose	-	builds acid from
65567	53424 ChEBI	tween 20	+	hydrolysis
65567	53426 ChEBI	tween 80	+	hydrolysis
65567	37166 ChEBI	xylan	-	hydrolysis
65567	18222 ChEBI	xylose	-	builds acid from

Antibiotic resistance

@ref	ChEBI	Metabolite	Resistance conc.	Sensitivity conc.
65567	2637	amikacin	30 µg (disc)
65567	28971	ampicillin	10 µg (disc)
65567	17698	chloramphenicol		30 µg (disc)
65567	48923	erythromycin		15 µg (disc)
65567	17833	gentamicin	10 µg (disc)
65567	6104	kanamycin	30 µg (disc)
65567	100147	nalidixic acid	30 µg (disc)
65567	17334	penicillin		10 Unit (disc)
65567	8309	polymyxin b	300 Unit (disc)
65567	17076	streptomycin	10 µg (disc)
65567	27902	tetracycline	30 µg (disc)
65567	28001	vancomycin		30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
65567	16136 ChEBI	hydrogen sulfide
65567	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
65567	acid phosphatase	+	3.1.3.2
65567	alkaline phosphatase	+	3.1.3.1
65567	alpha-chymotrypsin	-	3.4.21.1
65567	alpha-fucosidase	-	3.2.1.51
65567	alpha-galactosidase	-	3.2.1.22
65567	alpha-glucosidase	-	3.2.1.20
65567	alpha-mannosidase	-	3.2.1.24
65567	beta-galactosidase	-	3.2.1.23
65567	beta-glucosidase	-	3.2.1.21
65567	beta-glucuronidase	-	3.2.1.31
65567	catalase	+	1.11.1.6
65567	cystine arylamidase	+	3.4.11.3
65567	cytochrome oxidase	-	1.9.3.1
65567	esterase (C 4)	+
65567	esterase Lipase (C 8)	+
65567	leucine arylamidase	+	3.4.11.1
65567	lipase (C 14)	-
65567	N-acetyl-beta-glucosaminidase	+	3.2.1.52
65567	naphthol-AS-BI-phosphohydrolase	+
65567	trypsin	-	3.4.21.4
65567	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

65567

Fatty acid	Percentage
C15:0 iso	30.6
C15:1 iso G	17.1
C17:0 iso 3OH	13.7
C16:0 iso 3OH	8.4
C16:0 iso	6.1
C15:0 anteiso	5.7
C15:0 iso 3OH	3.6
C17:0 2OH	3.4
C13:0 iso	2.3
C14:0 iso	1.8
C15:0	1.5
C15:1 anteiso A	1.1
unknown 13.565	1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Aquatic plant

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture
65567	marine plant Zostrea marina	South Sea	Republic of Korea	KOR	Asia	33.4979	126.916 33.4979/126.916	MA
67770	Seaweed sample collected from the South Sea		Republic of Korea	KOR	Asia
67771	From marine plant, `Zostera marina`	South Sea	Republic of Korea	KOR	Asia	33.4979	126.916 33.4979/126.916

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Database
65567	Dokdonia aurantiaca strain ZOW29 16S ribosomal RNA gene, partial sequence	MF614626

GC content

@ref	GC-content (mol%)	Method
67771	38.0
67770	38	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Dokdonia aurantiaca sp. nov., isolated from seaweed Zostera marina.	Choi S, Kang JW, Kim MS, Yoon JH, Seong CN	Int J Syst Evol Microbiol	10.1099/ijsem.0.002730	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65567	Seon Choi, Joo Won Kang, Mi Sun Kim, Jung-Hoon Yoo and Chi Nam Seong: Dokdonia aurantiaca sp. nov., isolated from seaweed Zostera marina. IJSEM 68: 1697 - 1701 2018 ( DOI 10.1099/ijsem.0.002730 , PubMed 29570445 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Dokdonia aurantiaca (KCTC 52956, JCM 32295, ZOW29)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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