Strain identifier

BacDive ID: 158717

Type strain: Yes

Species: Proteus alimentorum

Strain Designation: 08MAS0041

Strain history: <- D. Wang; National Institute for Infectious Disease Control & Prevention, Chinese Center For Disease Control And Prevention, Beijing, P.R. CHINA; 08MAS0041<-D. Wang<--<-Y. lu Wang; Ma'anshan Center for Disease Control and Prevention, China.

NCBI tax ID(s): 1973495 (species)

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General

@ref: 67700

BacDive-ID: 158717

DSM-Number: 104685

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, Gram-negative, motile, rod-shaped

description: Proteus alimentorum 08MAS0041 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from food samples in Ma'anshan city.

NCBI tax id

  • NCBI tax id: 1973495
  • Matching level: species

strain history

  • @ref: 67700
  • history: <- D. Wang; National Institute for Infectious Disease Control & Prevention, Chinese Center For Disease Control And Prevention, Beijing, P.R. CHINA; 08MAS0041<-D. Wang<--<-Y. lu Wang; Ma'anshan Center for Disease Control and Prevention, China.

doi: 10.13145/bacdive158717.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Morganellaceae
  • genus: Proteus
  • species: Proteus alimentorum
  • full scientific name: Proteus alimentorum Dai et al. 2018

@ref: 67700

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Morganellaceae

genus: Proteus

species: Proteus alimentorum

full scientific name: Proteus alimentorum Dai et al. 2018

strain designation: 08MAS0041

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
65461negativerod-shapedyes
69480yes97.417
69480negative99.942

multimedia

  • @ref: 67700
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_104685.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 67700
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
65461positivegrowth30-45
65461positivegrowth10psychrophilic
65461positiveoptimum37mesophilic
67700positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 65461
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69480no99.03
69481no100

halophily

  • @ref: 65461
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-6 %(w/v)

observation

  • @ref: 65461
  • observation: swarm in periodic cycles when grown on LB medium containing 1.5 % agar at 37C for 24 h

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6546122599arabinose-fermentation
6546117234glucose+fermentation
6546137684mannose-fermentation
6546128053melibiose-fermentation
6546117268myo-inositol-fermentation
6546126546rhamnose-fermentation
6546153258sodium citrate+assimilation
6546127922sorbose-fermentation
6546117992sucrose+assimilation
6837117754glycerol+builds acid from
6837117113erythritol-builds acid from
6837117108D-arabinose+builds acid from
6837130849L-arabinose-builds acid from
6837116988D-ribose+builds acid from
6837165327D-xylose+builds acid from
6837165328L-xylose-builds acid from
6837115963ribitol-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837112936D-galactose+builds acid from
6837117634D-glucose+builds acid from
6837115824D-fructose+builds acid from
6837116024D-mannose-builds acid from
6837117266L-sorbose-builds acid from
6837162345L-rhamnose-builds acid from
6837116813galactitol-builds acid from
6837117268myo-inositol-builds acid from
6837116899D-mannitol-builds acid from
6837117924D-sorbitol-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
68371320061methyl alpha-D-glucopyranoside+builds acid from
6837159640N-acetylglucosamine+builds acid from
6837127613amygdalin-builds acid from
6837118305arbutin+builds acid from
683714853esculin+builds acid from
6837117814salicin+builds acid from
6837117057cellobiose-builds acid from
6837117306maltose+builds acid from
6837117716lactose-builds acid from
6837128053melibiose-builds acid from
6837117992sucrose+builds acid from
6837127082trehalose+builds acid from
6837115443inulin-builds acid from
683716731melezitose-builds acid from
6837116634raffinose-builds acid from
6837128017starch-builds acid from
6837128087glycogen-builds acid from
6837117151xylitol-builds acid from
6837128066gentiobiose-builds acid from
6837132528turanose+builds acid from
6837162318D-lyxose-builds acid from
6837116443D-tagatose-builds acid from
6837128847D-fucose-builds acid from
6837118287L-fucose-builds acid from
6837118333D-arabitol-builds acid from
6837118403L-arabitol-builds acid from
6837124265gluconate+builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371Potassium 5-ketogluconate-builds acid from

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitiveis resistant
65461100241ciprofloxacinyesyes
6546117833gentamicinyesyes
6546129007ceftriaxoneyesyes
6546117076streptomycinyesyes
65461471744imipenemyesyes
6546132161sulfadimethoxineyesyes
654616104kanamycinyesyes
65461102484sulfisoxazoleyesyes
65461209807cefoxitinyesyes
65461478164cefepimeyesyes
65461100147nalidixic acidyesyes
6546150845doxycyclineyesyes
6546127902tetracyclineyesyes
6546117698chloramphenicolyesyes
6546128971ampicillinyesyes
654612955azithromycinyesyes

metabolite production

@refChebi-IDmetaboliteproduction
6546135581indoleyes
6546115138sulfideyes

metabolite tests

  • @ref: 65461
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
65461urease+3.5.1.5
65461phenylalanine deaminase+4.3.1.5
65461beta-galactosidase-3.2.1.23
65461arginine dihydrolase-3.5.3.6
65461lysine decarboxylase-4.1.1.18
65461ornithine decarboxylase-4.1.1.17

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    65461C12:03.4
    65461C14:09.9
    65461C16:024.8
    65461C17:01.5
    65461Cyclo C17:012.6
    65461Cyclo C19:0ω8c1.4
    65461C16:1 iso I/C14:0 3-OH10.6
    65461C16:1ω7c/16:1ω6c16.5
    65461C18:1ω6c/C18:1ω7c14.5
  • type of FA analysis: whole cell analysis
  • incubation medium: LB plates with 1.5 % agar
  • incubation temperature: 35
  • incubation time: 1
  • system: MIS MIDI

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
67700-+-+-++---+++--------++-+++-+--++-------+------+--

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinentisolation procedurelatitudelongitude
65461food samples in Ma'anshan citySeptember 2008Anhui provinceChinaCHNAsiawas placed into 225 ml Gram-negative enrichment broth (Qingdao Hopebio Technology) and enriched for 8 h at 37C and streaked on Salmonella-Shigella (SS) and MacConkey agar plates (Becton Dickinson)
67700Food (Pork)Ma’anshan cityChinaCHNAsia31.6689118.507

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Food production
  • Cat3: #Food

taxonmaps

  • @ref: 69479
  • File name: preview.99_739.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_12;97_12;98_14;99_739&stattab=map
  • Last taxonomy: Proteus
  • 16S sequence: KY930949
  • Sequence Identity:
  • Total samples: 89
  • soil counts: 4
  • aquatic counts: 10
  • animal counts: 74
  • plant counts: 1

Sequence information

16S sequences

@refdescriptionaccessiondatabase
6546116S rRNA and rpoB gene sequencesKY930948nuccore
6546116S rRNA and rpoB gene sequencesKY930949nuccore

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Proteus alimentorum 08MAS0041GCA_002607735scaffoldncbi1973495
66792Proteus alimentorum 08MAS00412873863875draftimg1973495

GC content

  • @ref: 65461
  • GC-content: 38
  • method: sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedyes76.064no
gram-positiveno98.772no
anaerobicno97.108no
aerobicno57.152yes
halophileno91.879no
spore-formingno95.927no
glucose-utilyes87.619no
thermophileno99.125yes
motileyes90.797yes
glucose-fermentyes88.567yes

External links

@ref: 67700

culture collection no.: CGMCC 1.15939, DSM 104685

straininfo link

  • @ref: 111330
  • straininfo: 408002

literature

  • topic: Phylogeny
  • Pubmed-ID: 29509133
  • title: Proteus alimentorum sp. nov., isolated from pork and lobster in Ma'anshan city, China.
  • authors: Dai H, Wang Y, Fang Y, Huang Z, Kan B, Wang D
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002689
  • year: 2018
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nephropidae, Nucleic Acid Hybridization, *Phylogeny, Proteus/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Red Meat/*microbiology, Seafood/*microbiology, Sequence Analysis, DNA, Swine
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65461Hang Dai, Yonglu Wang, Yujie Fang, Zhenzhou Huang, Biao Kan, Duochun WangProteus alimentorum sp. nov., isolated from pork and lobster in Ma'anshan city, China10.1099/ijsem.0.002689IJSEM 68: 1390-1395 201829509133
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67700Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-104685Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104685)
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
111330Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID408002.1