Strain identifier

BacDive ID: 158604

Type strain: Yes

Species: Aureimonas populi

Strain Designation: 4M3-2

Strain history: <- Yong Li (Chinese Academy of Forestry, China)

NCBI tax ID(s): 1701758 (species)

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General

@ref: 65322

BacDive-ID: 158604

keywords: genome sequence, 16S sequence, Bacteria, facultative aerobe, mesophilic, Gram-negative, motile, rod-shaped, colony-forming

description: Aureimonas populi 4M3-2 is a facultative aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from Populus euramericana tree bark tissue.

NCBI tax id

  • NCBI tax id: 1701758
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Yong Li (Chinese Academy of Forestry, China)

doi: 10.13145/bacdive158604.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Aurantimonadaceae
  • genus: Aureimonas
  • species: Aureimonas populi
  • full scientific name: Aureimonas populi Li et al. 2018

@ref: 65322

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Hyphomicrobiales

family: Aurantimonadaceae

genus: Aureimonas

species: Aureimonas populi

strain designation: 4M3-2

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangementconfidence
65322negative1.2 µm0.7 µmrod-shapedyespolar
69480negative99.962

colony morphology

  • @ref: 65322
  • colony size: 0.6-0.8 mm
  • colony color: pale yellow-green
  • colony shape: circular
  • incubation period: 6 days
  • medium used: tryptic soy agar

Culture and growth conditions

culture medium

  • @ref: 65322
  • name: tryptic soy agar
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
65322positiveoptimum30mesophilic
65322nogrowth<4psychrophilic
65322nogrowth>40thermophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
65322positiveoptimum7
65322positivegrowth5-10alkaliphile

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
65322facultative aerobe
67771aerobe

spore formation

@refspore formationconfidence
69480no99.99
69481no100

halophily

  • @ref: 65322
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-4 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6532230089acetate+assimilation
6532217128adipate-assimilation
6532273706bromosuccinate+assimilation
6532227689decanoate-assimilation
6532216383cis-aconitate+assimilation
6532216947citrate+assimilation
6532218333D-arabitol+assimilation
6532215824D-fructose+assimilation
653228391D-gluconate+assimilation
6532217784D-glucosaminic acid+assimilation
6532216024D-mannose-assimilation
6532227605D-psicose+assimilation
6532217924D-sorbitol+assimilation
65322esculin ferric citrate+/-builds acid from
6532215740formate+assimilation
6532225115malate+assimilation
6532217306maltose-assimilation
6532251850methyl pyruvate+assimilation
65322506227N-acetylglucosamine-assimilation
6532217632nitrate-reduction
6532218401phenylacetate-assimilation
6532232032potassium gluconate+assimilation
6532217272propionate+assimilation
6532253258sodium citrate-assimilation
6532230031succinate+assimilation
6532227248urocanic acid+assimilation

metabolite production

@refChebi-IDmetaboliteproduction
6532215688acetoinno
6532216136hydrogen sulfideno
6532235581indoleno

enzymes

@refvalueactivityec
65322catalase+1.11.1.6
65322cytochrome oxidase+1.9.3.1
65322arginine dihydrolase+3.5.3.6
65322urease+3.5.1.5
65322alkaline phosphatase+3.1.3.1
65322esterase (C 4)+
65322leucine arylamidase+3.4.11.1
65322alpha-chymotrypsin+3.4.21.1
65322trypsin+3.4.21.4
65322acid phosphatase+3.1.3.2
65322naphthol-AS-BI-phosphohydrolase+
65322beta-glucosidase+/-3.2.1.21
65322gelatinase-
65322lipase (C 14)-
65322valine arylamidase-
65322alpha-galactosidase-3.2.1.22
65322beta-glucuronidase-3.2.1.31
65322alpha-glucosidase-3.2.1.20
65322N-acetyl-beta-glucosaminidase-3.2.1.52
65322alpha-mannosidase-3.2.1.24
65322alpha-fucosidase-3.2.1.51
65322cystine arylamidase+3.4.11.3
65322esterase Lipase (C 8)+/-
65322beta-galactosidase+/-3.2.1.23

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinentenrichment cultureenrichment culture durationenrichment culture temperatureisolation procedure
65322Populus euramericana tree bark tissue2012Puyang, Henan provinceChinaCHNAsianutrient agar2 days30surface-sterilized poplar bark tissue was ground using a sterile mortar and pestle. A dilution series of the resulting suspension was spread onto nutrient agar medium (Difco). After a 48 h incubation period at 30°C, a single colony was used to prepare a pure culture on nutrient agar medium.
67771From a poplar barkChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Plant#Bark
#Host#Plants#Tree

Sequence information

16S sequences

  • @ref: 65322
  • description: 16S rRNA gene sequence
  • accession: KP861644
  • database: nuccore

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aureimonas populi KCTC 42087GCA_017815515completencbi1701758
66792Aureimonas populi strain KCTC 420871701758.3completepatric1701758

GC content

  • @ref: 65322
  • GC-content: 62.7-63.1
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes75.996no
flagellatedno71.324no
gram-positiveno97.257yes
anaerobicno94.219yes
aerobicyes85.777no
halophileno83.357no
spore-formingno95.469no
thermophileno96.057no
glucose-utilyes88.888no
glucose-fermentno90.631no

External links

@ref: 65322

culture collection no.: CFCC 11187, KCTC 42087

literature

  • topic: Phylogeny
  • Pubmed-ID: 29265998
  • title: Aureimonas populi sp. nov., isolated from poplar tree bark.
  • authors: Li Y, Xu G, Lin C, Wang X, Piao CG
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002479
  • year: 2017
  • mesh: Alphaproteobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Glycolipids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Plant Bark/*microbiology, Populus/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65322Yong Li, Guangtang Xu, Caili Lin, Xizhuo Wang, Chun-gen PiaoAureimonas populi sp. nov., isolated from poplar tree bark10.1099/ijsem.0.002479IJSEM 68: 487-491 201829265998
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1