Name: Aureimonas populi 4M3-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158604

Type strain:

Species: Aureimonas populi

Strain Designation: 4M3-2

Culture col. no.: CFCC 11187, KCTC 42087

Strain history: <- Yong Li (Chinese Academy of Forestry, China)

NCBI tax ID(s): 1701758 (species)

Section

Aureimonas populi 4M3-2 is a facultative aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from Populus euramericana tree bark tissue.

colony-forming
Gram-negative
motile
rod-shaped
facultative aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Aurantimonadaceae*
	Genus	*Aureimonas*
	Species	**Aureimonas populi**
	Full Scientific Name (LPSN)	Aureimonas populi Li et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65322]	Gram stain	negative
[Ref.: #65322]	Cell length	1.2 µm
[Ref.: #65322]	Cell width	0.7 µm
[Ref.: #65322]	Cell shape	rod-shaped
[Ref.: #65322]	Motility	yes
[Ref.: #65322]	Flagellum arrangement	polar

[Ref.: #69480]	Gram stain	negative Confidence in %99.962

[Ref.: #65322]	Colony size	0.6-0.8 mm
[Ref.: #65322]	Colony color	pale yellow-green
[Ref.: #65322]	Colony shape	circular
[Ref.: #65322]	Incubation period	6 days
[Ref.: #65322]	Cultivation medium used	tryptic soy agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65322]

Culture medium

tryptic soy agar

[Ref.: #65322]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #65322]		optimum	30 °C
[Ref.: #65322]	no	growth	<4 °C
[Ref.: #65322]	no	growth	>40 °C
[Ref.: #67771]		growth	30 °C

[Ref.: #65322]	Temperature range	mesophilic
[Ref.: #65322]	Temperature range	psychrophilic
[Ref.: #65322]	Temperature range	thermophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #65322]			optimum	7
[Ref.: #65322]			growth	5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65322]	Oxygen tolerance	facultative aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.99
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65322]		NaCl		growth	0-4	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65322]	acetate ChEBI	+	assimilation
[Ref.: #65322]	adipate ChEBI	-	assimilation
[Ref.: #65322]	bromosuccinate ChEBI	+	assimilation
[Ref.: #65322]	cis-aconitate ChEBI	+	assimilation
[Ref.: #65322]	citrate ChEBI	+	assimilation
[Ref.: #65322]	D-arabitol ChEBI	+	assimilation
[Ref.: #65322]	D-fructose ChEBI	+	assimilation
[Ref.: #65322]	D-gluconate ChEBI	+	assimilation
[Ref.: #65322]	D-glucosaminic acid ChEBI	+	assimilation
[Ref.: #65322]	D-mannose ChEBI	-	assimilation
[Ref.: #65322]	D-psicose ChEBI	+	assimilation
[Ref.: #65322]	D-sorbitol ChEBI	+	assimilation
[Ref.: #65322]	decanoate ChEBI	-	assimilation
[Ref.: #65322]	esculin ferric citrate	+/-	builds acid from
[Ref.: #65322]	formate ChEBI	+	assimilation
[Ref.: #65322]	malate ChEBI	+	assimilation
[Ref.: #65322]	maltose ChEBI	-	assimilation
[Ref.: #65322]	methyl pyruvate ChEBI	+	assimilation
[Ref.: #65322]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #65322]	nitrate ChEBI	-	reduction
[Ref.: #65322]	phenylacetate ChEBI	-	assimilation
[Ref.: #65322]	potassium gluconate ChEBI	+	assimilation
[Ref.: #65322]	propionate ChEBI	+	assimilation
[Ref.: #65322]	sodium citrate ChEBI	-	assimilation
[Ref.: #65322]	succinate ChEBI	+	assimilation
[Ref.: #65322]	urocanic acid ChEBI	+	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #65322]	acetoin ChEBI	no
[Ref.: #65322]	hydrogen sulfide ChEBI	no
[Ref.: #65322]	indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65322]	acid phosphatase	+	3.1.3.2
[Ref.: #65322]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65322]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #65322]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65322]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65322]	alpha-glucosidase	-	3.2.1.20
[Ref.: #65322]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65322]	arginine dihydrolase	+	3.5.3.6
[Ref.: #65322]	beta-galactosidase	+/-	3.2.1.23
[Ref.: #65322]	beta-glucosidase	+/-	3.2.1.21
[Ref.: #65322]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65322]	catalase	+	1.11.1.6
[Ref.: #65322]	cystine arylamidase	+	3.4.11.3
[Ref.: #65322]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65322]	esterase (C 4)	+
[Ref.: #65322]	esterase Lipase (C 8)	+/-
[Ref.: #65322]	gelatinase	-
[Ref.: #65322]	leucine arylamidase	+	3.4.11.1
[Ref.: #65322]	lipase (C 14)	-
[Ref.: #65322]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65322]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65322]	trypsin	+	3.4.21.4
[Ref.: #65322]	urease	+	3.5.1.5
[Ref.: #65322]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65322]	Sample type/isolated from	Populus euramericana tree bark tissue
[Ref.: #65322]	Sampling date	2012
[Ref.: #65322]	Geographic location (country and/or sea, region)	Puyang, Henan province
[Ref.: #65322]	Country	China
[Ref.: #65322]	Country ISO 3 Code	CHN
[Ref.: #65322]	Continent	Asia
[Ref.: #65322]	Enrichment culture	nutrient agar
[Ref.: #65322]	Enrichment culture duration	2 days
[Ref.: #65322]	Enrichment culture temperature	30 ̊C
[Ref.: #65322]	Isolation/enrichment procedure	surface-sterilized poplar bark tissue was ground using a sterile mortar and pestle. A dilution series of the resulting suspension was spread onto nutrient agar medium (Difco). After a 48 h incubation period at 30°C, a single colony was used to prepare a pure culture on nutrient agar medium.

[Ref.: #67771]	Sample type/isolated from	From a poplar bark
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Plant	#Bark
#Host	#Plants	#Tree

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65322]	16S rRNA gene sequence	KP861644		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aureimonas populi KCTC 42087	GCA_017815515	complete	GenBank	1701758 tax ID	*
[Ref.: #66792]	Aureimonas populi strain KCTC 42087	1701758.3	complete	PATRIC	1701758 tax ID	*

[Ref.: #65322]

GC-content

62.7-63.1 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Aureimonas populi KCTC 42087 NCBI: GCA_017815515.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aureimonas populi KCTC 42087 NCBI: GCA_017815515.1
[Ref.: #69480]	motile	yes	75.996	no
[Ref.: #69480]	flagellated	no	71.324	no
[Ref.: #69480]	gram-positive	no	97.257	yes
[Ref.: #69480]	anaerobic	no	94.219	yes
[Ref.: #69480]	aerobic	yes	85.777	no
[Ref.: #69480]	halophile	no	83.357	no
[Ref.: #69480]	spore-forming	no	95.469	no
[Ref.: #69480]	thermophile	no	96.057	no
[Ref.: #69480]	glucose-util	yes	88.888	no
[Ref.: #69480]	glucose-ferment	no	90.631	no

Availability in culture collections External links

[Ref.: #65322]

Culture collection no.

CFCC 11187, KCTC 42087

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aureimonas populi sp. nov., isolated from poplar tree bark.	Li Y, Xu G, Lin C, Wang X, Piao CG	Int J Syst Evol Microbiol	10.1099/ijsem.0.002479	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65322

Yong Li, Guangtang Xu, Caili Lin, Xizhuo Wang, Chun-gen Piao: Aureimonas populi sp. nov., isolated from poplar tree bark. IJSEM 68: 487 - 491 2018 ( DOI 10.1099/ijsem.0.002479 , PubMed 29265998 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Aureimonas populi in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Aureimonas populi KCTC 42087

Aureimonas populi KCTC 42087

Change proposal

Change proposal