Strain identifier

BacDive ID: 158529

Type strain: Yes

Species: Rhodovulum aestuarii

Strain Designation: JA924

Strain history: <- Ch Sasikala, India

NCBI tax ID(s): 1671555 (species)

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General

@ref: 65206

BacDive-ID: 158529

keywords: 16S sequence, Bacteria, anaerobe, photoheterotroph, mesophilic, Gram-negative, rod-shaped

description: Rhodovulum aestuarii JA924 is an anaerobe, photoheterotroph, mesophilic bacterium that builds chains and aggregates and was isolated from brackish water.

NCBI tax id

  • NCBI tax id: 1671555
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Ch Sasikala, India

doi: 10.13145/bacdive158529.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Rhodovulum
  • species: Rhodovulum aestuarii
  • full scientific name: Rhodovulum aestuarii Divyasree et al. 2016

@ref: 65206

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Rhodovulum

species: Rhodovulum aestuarii

strain designation: JA924

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell shapemotility
65206negative2-3 µmrod-shapedno
65206oval-shaped
67771rod-shapedno
67771negative

colony morphology

  • @ref: 65206
  • colony color: yellowish brown

multicellular morphology

  • @ref: 65206
  • forms multicellular complex: yes
  • complex name: chains and aggregates

pigmentation

@refproductionname
65206yesBacteriochlorophyll-a
65206yesspheroidene

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
65206positivegrowth25-35mesophilic
65206positiveoptimum30mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
65206positivegrowth6-10alkaliphile
65206positiveoptimum7.5

Physiology and metabolism

tolerance

  • @ref: 65206
  • compound: sulfide
  • concentration: 4.0 mM

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: anaerobe

nutrition type

@reftype
65206photoheterotroph
65206photolithoautotroph
65206chemoorganoheterotroph

halophily

@refsaltgrowthtested relationconcentration
65206NaClpositivegrowth0-8 %(w/v)
65206NaClpositiveoptimum2-4 %(w/v)

observation

@refobservation
65206Bacteriochlorophyll-a and spheroidene are the photosynthetic pigments.
65206Chemolithoautotrophy and fermentative growth are absent.
67771quinones: Q-10

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
65206309162-oxoglutarate-carbon source
65206309162-oxoglutarate-electron donor
6520630089acetate+carbon source
6520630089acetate+electron donor
6520631206ammonium chloride+nitrogen source
6520622651ascorbate-carbon source
6520622651ascorbate-electron donor
6520635391aspartate-carbon source
6520635391aspartate-electron donor
6520635391aspartate+nitrogen source
6520616150benzoate-carbon source
6520616150benzoate-electron donor
6520628885butanol-carbon source
6520628885butanol-electron donor
6520617968butyrate-carbon source
6520617968butyrate-electron donor
6520627689decanoate-carbon source
6520627689decanoate-electron donor
65206casamino acids+carbon source
65206casamino acids+electron donor
6520616947citrate-carbon source
6520616947citrate-electron donor
6520635899crotonate-carbon source
6520635899crotonate-electron donor
6520617997dinitrogen+nitrogen source
6520624996lactate-carbon source
6520624996lactate-electron donor
6520616236ethanol-carbon source
6520616236ethanol-electron donor
6520615740formate+carbon source
6520615740formate+electron donor
6520628757fructose+carbon source
6520628757fructose+electron donor
6520629806fumarate-carbon source
6520629806fumarate-electron donor
6520624265gluconate+carbon source
6520624265gluconate+electron donor
6520617234glucose+/-carbon source
6520617234glucose+/-electron donor
6520628300glutamine+nitrogen source
6520617754glycerol-carbon source
6520617754glycerol-electron donor
6520629805glycolate-carbon source
6520629805glycolate-electron donor
6520629985L-glutamate-carbon source
6520629985L-glutamate-electron donor
6520625115malate-carbon source
6520625115malate-electron donor
6520617306maltose-carbon source
6520617306maltose-electron donor
6520629864mannitol-carbon source
6520629864mannitol-electron donor
6520617790methanol-carbon source
6520617790methanol-electron donor
6520616811methionine+carbon source
6520616811methionine+electron donor
6520617632nitrate+nitrogen source
65206peptone+carbon source
65206peptone+electron donor
6520628831propanol-carbon source
6520628831propanol-electron donor
6520617272propionate-carbon source
6520617272propionate-electron donor
6520615361pyruvate+carbon source
6520615361pyruvate+electron donor
6520630911sorbitol+carbon source
6520630911sorbitol+electron donor
6520630031succinate+carbon source
6520630031succinate+electron donor
6520617992sucrose+carbon source
6520617992sucrose+electron donor
6520616189sulfate+assimilation
6520615138sulfide+assimilation
6520615138sulfide+carbon source
6520615138sulfide+electron donor
65206132950tartrate-carbon source
65206132950tartrate-electron donor
6520647869thioglycolate-carbon source
6520647869thioglycolate-electron donor
6520616094thiosulfate+assimilation
6520631011valerate-carbon source
6520631011valerate-electron donor

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
65206brackish waternear Somnath on the western coast of GujaratIndiaINDAsia
67771From brackish waternear Somnath temple, western coast of GujaratIndiaINDAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Brackish

taxonmaps

  • @ref: 69479
  • File name: preview.99_39633.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_663;97_22987;98_28981;99_39633&stattab=map
  • Last taxonomy: Rhodovulum aestuarii
  • 16S sequence: LN866627
  • Sequence Identity:
  • Total samples: 273
  • soil counts: 16
  • aquatic counts: 228
  • animal counts: 28
  • plant counts: 1

Sequence information

16S sequences

  • @ref: 65206
  • description: 16S rRNA gene sequence
  • accession: LN866627
  • database: nuccore

GC content

@refGC-contentmethod
6520663.92-64.08high performance liquid chromatography (HPLC)
6777163.92-64.08

External links

@ref: 65206

culture collection no.: LMG 29031, KCTC 15485

straininfo link

  • @ref: 111318
  • straininfo: 396447

literature

  • topic: Phylogeny
  • Pubmed-ID: 26475698
  • title: Rhodovulum aestuarii sp. nov., isolated from a brackish water body.
  • authors: Divyasree B, Lakshmi KVNS, Bharti D, Sasikala C, Ramana CV
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000691
  • year: 2015
  • mesh: Bacterial Typing Techniques, Bacteriochlorophyll A, Base Composition, Carotenoids/chemistry, DNA, Bacterial/genetics, Estuaries, Fatty Acids/chemistry, India, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodovulum/*classification/genetics/isolation & purification, *Saline Waters, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65206B. Divyasree, K. V. N. S. Lakshmi, Dave Bharti, Ch. Sasikala, Ch. V. RamanaRhodovulum aestuarii sp. nov., isolated from a brackish water body10.1099/ijsem.0.000691IJSEM 66: 165-171 201626475698
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
111318Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396447.1