Archive BacDiveID:10.13145/bacdive158486.20230509.8.1

Strain identifier

BacDive ID: 158486

Type strain:

Species: Desulfohalovibrio reitneri

Strain Designation: L21-Syr-AB

Strain history: S. Spring; DSMZ, Germany; L21-Syr-AB.

NCBI tax ID(s): 1307759 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 65162

BacDive-ID: 158486

DSM-Number: 26903

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Desulfohalovibrio reitneri L21-Syr-AB is a mesophilic bacterium that was isolated from suboxic zone of a cyanobacterial mat at the littoral zone of a hypersaline lake.

NCBI tax id

NCBI tax id: 1307759
Matching level: species

strain history

@ref	history
65162	<- S. Spring, Leibniz-Institut DSMZ GmbH; L21-Syr-AB <- S. Spring {2011}
67770	S. Spring; DSMZ, Germany; L21-Syr-AB.

doi: 10.13145/bacdive158486.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Deltaproteobacteria
order: Desulfovibrionales
family: Desulfovibrionaceae
genus: Desulfohalovibrio
species: Desulfohalovibrio reitneri
full scientific name: Desulfohalovibrio reitneri Spring et al. 2019

@ref: 65162

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfovibrionales

family: Desulfovibrionaceae

genus: Desulfohalovibrio

species: Desulfohalovibrio reitneri

full scientific name: Desulfohalovibrio reitneri Spring et al. 2019

strain designation: L21-Syr-AB

type strain: yes

Culture and growth conditions

culture medium

@ref: 65162
name: DESULFOHALOVIBRIO (L21 LS) MEDIUM (DSMZ Medium 1526c)
growth: yes
link: https://mediadive.dsmz.de/medium/1526c
composition: Name: DESULFOHALOVIBRIO (L21 LS) MEDIUM (DSMZ Medium 1526c) Composition: Na-pyruvate 2.5 g/l KCl 1.5 g/l Na2CO3 1.5 g/l NH4Cl 1.0 g/l Yeast extract 1.0 g/l Na2S2O3 x 5 H2O 1.0 g/l Na2S x 9 H2O 0.5 g/l K2HPO4 0.4 g/l MgSO4 x 7 H2O 0.03 g/l Nitrilotriacetic acid 0.015 g/l NaCl 0.01 g/l MnSO4 x H2O 0.005 g/l CoSO4 x 7 H2O 0.0018 g/l ZnSO4 x 7 H2O 0.0018 g/l FeSO4 x 7 H2O 0.001 g/l CaCl2 x 2 H2O 0.001 g/l Sodium resazurin 0.0005 g/l NiCl2 x 6 H2O 0.0003 g/l AlK(SO4)2 x 12 H2O 0.0002 g/l Pyridoxine hydrochloride 0.0001 g/l H3BO3 0.0001 g/l Na2MoO4 x 2 H2O 0.0001 g/l CuSO4 x 5 H2O 0.0001 g/l Riboflavin 5e-05 g/l (DL)-alpha-Lipoic acid 5e-05 g/l p-Aminobenzoic acid 5e-05 g/l Calcium D-(+)-pantothenate 5e-05 g/l Nicotinic acid 5e-05 g/l Thiamine HCl 5e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l Na2WO4 x 2 H2O 4e-06 g/l Na2SeO3 x 5 H2O 3e-06 g/l Vitamin B12 1e-06 g/l Distilled water

culture temp

@ref	growth	type	temperature	range
65162	positive	growth	35	mesophilic
67770	positive	growth	35	mesophilic

Physiology and metabolism

observation

@ref: 67770
observation: quinones: MK-7, MK-6

Isolation, sampling and environmental information

isolation

@ref	sample type	geographic location	country	origin.country	continent
65162	suboxic zone of a cyanobacterial mat at the littoral zone of a hypersaline lake	Kiritimati, Lake 21	Kiribati	KIR	Australia and Oceania
67770	Suboxic zone of a lithifying cyanobacterial mat in the hypersaline Lake 21 at the Kiritimai Atoll		Kiribati	KIR	Australia and Oceania

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Microbial community	#Microbial mat
#Condition	#Saline
#Host	#Microbial	#Bacteria

taxonmaps

@ref: 69479
File name: preview.99_1024.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_179;96_587;97_687;98_800;99_1024&stattab=map
Last taxonomy: Desulfohalovibrio reitneri subclade
16S sequence: KC665952
Sequence Identity:
Total samples: 432
soil counts: 27
aquatic counts: 289
animal counts: 108
plant counts: 8

Sequence information

16S sequences

@ref	description	accession	length	database	NCBI tax ID
65162	Desulfovibrio sp. L21-Syr-AB 16S ribosomal RNA gene, partial sequence	KC665952	1534	ena	1307759
67770	Desulfohalovibrio reitneri strain L21-Syr-AB N911DRAFT_scf7180000000014_quiver.3_C, whole genome shotgun sequence	JOMJ01000003	2531670	ena	1307759

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Desulfohalovibrio reitneri L21-Syr-AB	2571042914	draft	img	1307759
67770	Desulfohalovibrio reitneri L21-Syr-AB	GCA_000711295	contig	ncbi	1307759

GC content

@ref: 67770
GC-content: 65.47
method: genome sequence analysis

External links

@ref: 65162

culture collection no.: DSM 26903, JCM 18662

straininfo link

@ref: 111281
straininfo: 397183

literature

Pubmed-ID: 31068923
title: Sulfate-Reducing Bacteria That Produce Exopolymers Thrive in the Calcifying Zone of a Hypersaline Cyanobacterial Mat.
authors: Spring S, Sorokin DY, Verbarg S, Rohde M, Woyke T, Kyrpides NC
journal: Front Microbiol
DOI: 10.3389/fmicb.2019.00862
year: 2019

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
65162	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-26903	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26903)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/
111281	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID397183.1