Archive BacDiveID:10.13145/bacdive158467.20230509.8.1

Strain identifier

BacDive ID: 158467

Type strain:

Species: Kocuria tytonis

Strain Designation: 442

Strain history: <- M. Santhosh Braun, Institute of Pharmacy and Molecular Biotechnology (IPMB), Heidelberg, Germany; 442

NCBI tax ID(s): 2054280 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 65143

BacDive-ID: 158467

DSM-Number: 104130

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Kocuria tytonis 442 is a mesophilic bacterium that was isolated from Preen gland of Tyto furcata.

NCBI tax id

NCBI tax id: 2054280
Matching level: species

strain history

@ref: 65143
history: <- M. Santhosh Braun, Institute of Pharmacy and Molecular Biotechnology (IPMB), Heidelberg, Germany; 442

doi: 10.13145/bacdive158467.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Micrococcales
family: Micrococcaceae
genus: Kocuria
species: Kocuria tytonis
full scientific name: Kocuria tytonis Braun et al. 2019

@ref: 65143

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Kocuria

species: Kocuria tytonis

full scientific name: Kocuria tytonis Braun et al. 2019

strain designation: 442

type strain: yes

Morphology

cell morphology

@ref	motility	confidence	gram stain
69480	no	96.255
69480		100	positive

Culture and growth conditions

culture medium

@ref: 65143
name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
growth: yes
link: https://mediadive.dsmz.de/medium/92
composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@ref: 65143
growth: positive
type: growth
temperature: 28
range: mesophilic

Physiology and metabolism

spore formation

@ref	spore formation	confidence
69480	no	99.998
69481	no	100

Isolation, sampling and environmental information

isolation

@ref: 65143
sample type: Preen gland of Tyto furcata
geographic location: Heidelberg
country: Germany
origin.country: DEU
continent: Europe

isolation source categories

Cat1	Cat2
#Host	#Birds
#Host Body-Site	#Organ

taxonmaps

@ref: 69479
File name: preview.99_5667.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_424;97_481;98_552;99_5667&stattab=map
Last taxonomy: Kocuria
16S sequence: MG547562
Sequence Identity:
Total samples: 11262
soil counts: 468
aquatic counts: 947
animal counts: 9694
plant counts: 153

Sequence information

16S sequences

@ref: 65143
description: Kocuria sp. 442 16S ribosomal RNA gene, partial sequence
accession: MG547562
length: 1415
database: ena
NCBI tax ID: 2054280

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Kocuria tytonis 442	GCA_003226895	contig	ncbi	2054280
66792	Kocuria sp. 442	2054280.3	wgs	patric	2054280
66792	Kocuria tytonis 442	2847138596	draft	img	2054280

GC content

@ref: 65143
GC-content: 70.8

Genome-based predictions

predictions

trait	prediction	confidence	training_data
spore-forming	no	100	no
motile	no	94.024	no
gram-positive	yes	94.572	no
anaerobic	no	99.473	no
aerobic	yes	88.556	no
halophile	yes	72.777	no
spore-forming	no	94.391	no
glucose-util	yes	90.506	no
flagellated	no	97.517	no
thermophile	no	94.885	yes
glucose-ferment	no	78.274	no

External links

@ref: 65143

culture collection no.: DSM 104130, LMG 29944

straininfo link

@ref: 111264
straininfo: 400076

literature

topic: Phylogeny
Pubmed-ID: 30556804
title: Kocuria tytonis sp. nov., isolated from the uropygial gland of an American barn owl (Tyto furcata).
authors: Braun MS, Wang E, Zimmermann S, Wagner H, Wink M
journal: Int J Syst Evol Microbiol
DOI: 10.1099/ijsem.0.003170
year: 2019
mesh: Animal Structures/*microbiology, Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Germany, Micrococcaceae/*classification/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Strigiformes/*microbiology, United States, Vitamin K 2/analogs & derivatives/chemistry
topic2: Transcriptome

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
65143	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-104130	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104130)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
69481	Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch	Predictions based on the model GenomeNet Sporulation v. 1	10.21203/rs.3.rs-2527258/v1
111264	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID400076.1