Strain identifier
BacDive ID: 158425
Type strain: 
Species: Mycobacterium decipiens
Strain history: <- E. Tortoli, San Raffaele Scientific Institute, Milano, Italy; TBL 1200985 <- B. A. Brown-Elliot, Univ. of Texas, Health Science Center at tyler (UTHSCT), Mycobacteria/Nocardia Laboratory, Tyler, Texas USA; TBL 1200985 <- N. Wengenack, Mayo Medical Laboratories, Andover, USA; TBL 1200985 <- J. Branda, Massachusetts General Hospital, Boston, USA; TBL 1200985
NCBI tax ID(s): 1430326 (species)
version 8.1 (current version)
General
@ref: 65101
BacDive-ID: 158425
DSM-Number: 105360
keywords: 16S sequence, Bacteria, mesophilic
description: Mycobacterium decipiens DSM 105360 is a mesophilic bacterium that was isolated from biopsy right thumb, human .
NCBI tax id
- NCBI tax id: 1430326
- Matching level: species
strain history
- @ref: 65101
- history: <- E. Tortoli, San Raffaele Scientific Institute, Milano, Italy; TBL 1200985 <- B. A. Brown-Elliot, Univ. of Texas, Health Science Center at tyler (UTHSCT), Mycobacteria/Nocardia Laboratory, Tyler, Texas USA; TBL 1200985 <- N. Wengenack, Mayo Medical Laboratories, Andover, USA; TBL 1200985 <- J. Branda, Massachusetts General Hospital, Boston, USA; TBL 1200985
doi: 10.13145/bacdive158425.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium decipiens
- full scientific name: Mycobacterium decipiens Brown-Elliott et al. 2018
@ref: 65101
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium decipiens
full scientific name: Mycobacterium decipiens Brown-Elliott et al. 2018
type strain: yes
Morphology
cell morphology
- @ref: 66742
- motility: no
pigmentation
- @ref: 66742
- production: no
multimedia
- @ref: 65101
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_105360.jpg
- caption: Medium 645 37°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 65101 | MIDDLEBROOK MEDIUM (DSMZ Medium 645) | yes | https://mediadive.dsmz.de/medium/645 | Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water |
| 66742 | Mac-Conkey agar without crystal violet | no | ||
| 66742 | solid media | yes | ||
| 66742 | standard media | no |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 65101 | positive | growth | 37 | mesophilic |
| 66742 | positive | growth | 25-37 | mesophilic |
Physiology and metabolism
spore formation
- @ref: 66742
- spore formation: no
observation
- @ref: 66742
- observation: mycobacterial strain with close similarity to the Mycobacterium tuberculosis complex (MTBC)
metabolite utilization
- @ref: 66742
- Chebi-ID: 53426
- metabolite: tween 80
- utilization activity: -
- kind of utilization tested: hydrolysis
antibiotic resistance
| @ref | ChEBI | metabolite | is antibiotic | is sensitive | sensitivity conc. | is resistant | resistance conc. |
|---|---|---|---|---|---|---|---|
| 66742 | 2637 | Amikacin | yes | yes | 1 µg/mL | ||
| 66742 | 100241 | ciprofloxacin | yes | yes | 4 µg/mL | ||
| 66742 | 3732 | clarithromycin | yes | yes | 4 µg/mL | ||
| 66742 | 50845 | doxycycline | yes | yes | 0.5 µg/mL | ||
| 66742 | 63607 | linezolid | yes | yes | 1 µg/mL | ||
| 66742 | 63611 | moxifloxacin | yes | yes | 0.5 µg/mL | ||
| 66742 | 45367 | rifabutin | yes | yes | 0.25 µg/mL | ||
| 66742 | 28077 | rifampicin | yes | yes | 2 µg/mL |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 66742 | beta-glucosidase | - | 3.2.1.21 |
| 66742 | nitrate reductase | - | 1.7.99.4 |
| 66742 | urease | - | 3.5.1.5 |
| 66742 | catalase | + | 1.11.1.6 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude | sampling date | enrichment culture | enrichment culture duration | enrichment culture temperature |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 65101 | biopsy right thumb, human (58-year-old female) | Boston, MA | USA | USA | North America | 42.361 | -71.057 | ||||
| 66742 | cutaneous lesions from a 58-year-old female reporting swelling and pain at the right thumb and wrist for 8 months | USA | USA | North America | 2012 | solid media | 20 days | 25-37 |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Patient | #Biopsy |
| #Host | #Human | #Female |
| #Host Body-Site | #Limb | #Hand |
taxonmaps
- @ref: 69479
- File name: preview.99_45.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_37;97_39;98_43;99_45&stattab=map
- Last taxonomy: Mycobacterium
- 16S sequence: KF683289
- Sequence Identity:
- Total samples: 34150
- soil counts: 16288
- aquatic counts: 7630
- animal counts: 6565
- plant counts: 3667
Sequence information
16S sequences
- @ref: 66742
- description: Mycobacterium sp. TBL 1200985 16S ribosomal RNA gene, partial sequence
- accession: KF683289
- length: 1504
- database: ena
- NCBI tax ID: 1430326
GC content
- @ref: 66742
- GC-content: 65.4
External links
@ref: 65101
culture collection no.: DSM 105360, TBL 1200985, ATCC TSD-117
straininfo link
- @ref: 111226
- straininfo: 404588
literature
- topic: Phylogeny
- Pubmed-ID: 30204586
- title: Mycobacterium decipiens sp. nov., a new species closely related to the Mycobacterium tuberculosis complex.
- authors: Brown-Elliott BA, Simmer PJ, Trovato A, Hyle EP, Droz S, Buckwalter SP, Borroni E, Branda JA, Iana E, Mariottini A, Nelson J, Matteelli A, Toney NC, Scarparo C, de Man TJB, Vasireddy R, Gandhi RT, Wengenack NL, Cirillo DM, Wallace RJ, Tortoli E
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.003031
- year: 2018
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Humans, Italy, Mycobacterium/*classification/genetics/isolation & purification, Mycobacterium Infections/*microbiology, Mycobacterium tuberculosis, Mycolic Acids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tuberculosis, Cutaneous/*microbiology, United States
- topic2: Pathogenicity
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 65101 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-105360 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105360) | |||
| 66742 | Barbara A. Brown-Elliott, Patricia J. Simmer, Alberto Trovato, Emily P. Hyle, Sara Droz, Seanne P. Buckwalter, Emanuele Borroni, John A. Branda, Elkina Iana, Alessandro Mariottini, Jameelah Nelson, Alberto Matteelli, Nadege C. Toney, Claudio Scarparo, Tom J. B. de Man, Ravikiran Vasireddy, Rajesh T. Gandhi, Nancy L. Wengenack, Daniela M. Cirillo, Richard J. Wallace and Enrico Tortoli | Mycobacterium decipiens sp. nov., a new species closely related to the Mycobacterium tuberculosis complex | 10.1099/ijsem.0.003031 | IJSEM 68: 3557-3562 2018 | 30204586 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 111226 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404588.1 |