Strain identifier

BacDive ID: 158425

Type strain: Yes

Species: Mycobacterium decipiens

Strain history: <- E. Tortoli, San Raffaele Scientific Institute, Milano, Italy; TBL 1200985 <- B. A. Brown-Elliot, Univ. of Texas, Health Science Center at tyler (UTHSCT), Mycobacteria/Nocardia Laboratory, Tyler, Texas USA; TBL 1200985 <- N. Wengenack, Mayo Medical Laboratories, Andover, USA; TBL 1200985 <- J. Branda, Massachusetts General Hospital, Boston, USA; TBL 1200985

NCBI tax ID(s): 1430326 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 65101

BacDive-ID: 158425

DSM-Number: 105360

keywords: mesophilic, Bacteria, 16S sequence

description: Mycobacterium decipiens DSM 105360 is a mesophilic bacterium that was isolated from biopsy right thumb, human .

NCBI tax id

  • NCBI tax id: 1430326
  • Matching level: species

strain history: <- E. Tortoli, San Raffaele Scientific Institute, Milano, Italy; TBL 1200985 <- B. A. Brown-Elliot, Univ. of Texas, Health Science Center at tyler (UTHSCT), Mycobacteria/Nocardia Laboratory, Tyler, Texas USA; TBL 1200985 <- N. Wengenack, Mayo Medical Laboratories, Andover, USA; TBL 1200985 <- J. Branda, Massachusetts General Hospital, Boston, USA; TBL 1200985

doi: 10.13145/bacdive158425.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium decipiens
  • full scientific name: Mycobacterium decipiens Brown-Elliott et al. 2018

@ref: 65101

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium decipiens

full scientific name: Mycobacterium decipiens Brown-Elliott et al. 2018

type strain: yes

Morphology

cell morphology

  • @ref: 66742
  • motility: no

pigmentation

  • @ref: 66742
  • production: no

multimedia

  • @ref: 65101
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_105360.jpg
  • caption: Medium 645 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
65101MIDDLEBROOK MEDIUM (DSMZ Medium 645)yeshttps://bacmedia.dsmz.de/medium/645Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
66742Mac-Conkey agar without crystal violetno
66742solid mediayes
66742standard mediano

culture temp

@refgrowthtypetemperaturerange
65101positivegrowth37mesophilic
66742positivegrowth25-37mesophilic

Physiology and metabolism

spore formation

  • @ref: 66742
  • spore formation: no

observation

  • @ref: 66742
  • observation: mycobacterial strain with close similarity to the Mycobacterium tuberculosis complex (MTBC)

metabolite utilization

  • @ref: 66742
  • Chebi-ID: 53426
  • metabolite: tween 80
  • utilization activity: -
  • kind of utilization tested: hydrolysis

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
667422637Amikacinyesyes1 µg/mL
66742100241ciprofloxacinyesyes4 µg/mL
667423732clarithromycinyesyes4 µg/mL
6674250845doxycyclineyesyes0.5 µg/mL
6674263607linezolidyesyes1 µg/mL
6674263611moxifloxacinyesyes0.5 µg/mL
6674245367rifabutinyesyes0.25 µg/mL
6674228077rifampicinyesyes2 µg/mL

enzymes

@refvalueactivityec
66742beta-glucosidase-3.2.1.21
66742nitrate reductase-1.7.99.4
66742urease-3.5.1.5
66742catalase+1.11.1.6

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudesampling dateenrichment cultureenrichment culture durationenrichment culture temperature
65101biopsy right thumb, human (58-year-old female)Boston, MAUSAUSANorth America42.361-71.057
66742cutaneous lesions from a 58-year-old female reporting swelling and pain at the right thumb and wrist for 8 monthsUSAUSANorth America2012solid media20 days25-37

isolation source categories

Cat1Cat2Cat3
#Infection#Patient#Biopsy
#Host#Human#Female
#Host Body-Site#Limb#Hand

Sequence information

16S sequences

  • @ref: 66742
  • description: Mycobacterium sp. TBL 1200985 16S ribosomal RNA gene, partial sequence
  • accession: KF683289
  • length: 1504
  • database: ena
  • NCBI tax ID: 1430326

GC content

  • @ref: 66742
  • GC-content: 65.4

External links

@ref: 65101

culture collection no.: DSM 105360, TBL 1200985, ATCC TSD-117

literature

  • topic: Phylogeny
  • Pubmed-ID: 30204586
  • title: Mycobacterium decipiens sp. nov., a new species closely related to the Mycobacterium tuberculosis complex.
  • authors: Brown-Elliott BA, Simmer PJ, Trovato A, Hyle EP, Droz S, Buckwalter SP, Borroni E, Branda JA, Iana E, Mariottini A, Nelson J, Matteelli A, Toney NC, Scarparo C, de Man TJB, Vasireddy R, Gandhi RT, Wengenack NL, Cirillo DM, Wallace RJ, Tortoli E
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.003031
  • year: 2018
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Humans, Italy, Mycobacterium/*classification/genetics/isolation & purification, Mycobacterium Infections/*microbiology, Mycobacterium tuberculosis, Mycolic Acids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tuberculosis, Cutaneous/*microbiology, United States
  • topic2: Pathogenicity

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65101Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-105360Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105360)
66742Barbara A. Brown-Elliott, Patricia J. Simmer, Alberto Trovato, Emily P. Hyle, Sara Droz, Seanne P. Buckwalter, Emanuele Borroni, John A. Branda, Elkina Iana, Alessandro Mariottini, Jameelah Nelson, Alberto Matteelli, Nadege C. Toney, Claudio Scarparo, Tom J. B. de Man, Ravikiran Vasireddy, Rajesh T. Gandhi, Nancy L. Wengenack, Daniela M. Cirillo, Richard J. Wallace and Enrico TortoliMycobacterium decipiens sp. nov., a new species closely related to the Mycobacterium tuberculosis complex10.1099/ijsem.0.003031IJSEM 68: 3557-3562 201830204586