Mycobacterium decipiens (DSM 105360, TBL 1200985, ATCC TSD-117)

Name: Mycobacterium decipiens (DSM 105360, TBL 1200985, ATCC TSD-117)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158425

Type strain

Culture col. no. DSM 105360 TBL 1200985 ATCC TSD-117

NCBI tax ID(s) 1430326

Special Collections DSMZ Literature strains

History <- E. Tortoli, San Raffaele Scientific Institute, Milano, Italy; TBL 1200985 <- B. A. Brown-Elliot, Univ. of Texas, Health Science Center at tyler (UTHSCT), Mycobacteria/Nocardia Laboratory, Tyler, Texas USA; TBL 1200985 <- N. Wengenack, Mayo Medical Laboratories, Andover, USA; TBL 1200985 <- J. Branda, Massachusetts General Hospital, Boston, USA; TBL 1200985

Links

Mycobacterium decipiens DSM 105360 is a bacterium that was isolated from biopsy right thumb, human .

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 404588

ATCC TSD-117,DSM 105360

@ref 20215

Last LPSN update 2026-02-09 11:38:19

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium decipiens

Full scientific name Mycobacterium decipiens Brown-Elliott et al. 2018

Morphology

Cell morphology

66742

Motilityno

Pigmentation

66742

Productionno

Multimedia

@ref:	65101
multimedia content:	DSM_105360.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_105360.jpg
caption:	Medium 645 37°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
65101	MIDDLEBROOK MEDIUM (DSMZ Medium 645)	Medium recipe at MediaDive	Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
66742	solid media
66742	Mac-Conkey agar without crystal violet
66742	standard media

Culture temp

@ref	Growth	Type	Temperature (°C)
65101	positive	growth	37
66742	positive	growth	25-37

Physiology and metabolism

Spore formation

66742

Spore formationno

Observation

66742

Observationmycobacterial strain with close similarity to the Mycobacterium tuberculosis complex (MTBC)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
66742	53426 ChEBI	tween 80	-	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
66742	2637	Amikacin	1 µg/mL
66742	100241	ciprofloxacin		4 µg/mL
66742	3732	clarithromycin	4 µg/mL
66742	50845	doxycycline	0.5 µg/mL
66742	63607	linezolid	1 µg/mL
66742	63611	moxifloxacin	0.5 µg/mL
66742	45367	rifabutin	0.25 µg/mL
66742	28077	rifampicin		2 µg/mL

Enzymes

@ref	Value	Activity	Ec
66742	beta-glucosidase	-	3.2.1.21
66742	catalase	+	1.11.1.6
66742	nitrate reductase	-	1.7.99.4
66742	urease	-	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	#Biopsy
#Host	#Human	#Female
#Host Body-Site	#Limb	#Hand

Isolation

@ref	Sample type	Sampling date	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture duration	Enrichment culture temperature	Geographic location	Latitude	Longitude
65101	biopsy right thumb, human (58-year-old female)		USA	USA	North America				Boston, MA	42.361	-71.057 42.361/-71.057
66742	cutaneous lesions from a 58-year-old female reporting swelling and pain at the right thumb and wrist for 8 months	2012	USA	USA	North America	solid media	20 days	25-37

Taxonmaps

69479

Global distribution of 16S sequence KF683289 (>99% sequence identity) for Mycobacterium from Microbeatlas

Aquatic Samples	7630
Soil Samples	16288
Animal Samples	6565
Plant Samples	3667
Total Samples	34150

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	MdecATCCTSD117v1 assembly for Mycobacterium decipiens ATCC TSD-117	complete	GCA_963853665			1430326	95.9
124043	ASM210467v1 assembly for Mycobacterium decipiens TBL 1200985	contig	GCA_002104675	1430326.3	2865607711	1430326	50.22

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66742	Mycobacterium sp. TBL 1200985 16S ribosomal RNA gene, partial sequence	KF683289	1504		1430326

GC content

66742

GC-content (mol%)65.4

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Genomic and phenotypic characterization of Mycobacterium tuberculosis' closest-related non-tuberculous mycobacteria.	Sous C, Frigui W, Pawlik A, Sayes F, Ma L, Cokelaer T, Brosch R.	Microbiol Spectr	10.1128/spectrum.04126-23	2024
	Marine sponge microbe provides insights into evolution and virulence of the tubercle bacillus.	Pidot SJ, Klatt S, Ates LS, Frigui W, Sayes F, Majlessi L, Izumi H, Monk IR, Porter JL, Bennett-Wood V, Seemann T, Otter A, Taiaroa G, Cook GM, West N, Tobias NJ, Fuerst JA, Stutz MD, Pellegrini M, McConville M, Brosch R, Stinear TP.	PLoS Pathog	10.1371/journal.ppat.1012440	2024
	Current Updates on Mycobacterial Taxonomy, 2018 to 2019.	Armstrong DT, Parrish N.	J Clin Microbiol	10.1128/jcm.01528-20	2021
	Mycobacteria that cause tuberculosis have retained ancestrally acquired genes for the biosynthesis of chemically diverse terpene nucleosides.	Mayfield JA, Raman S, Ramnarine AK, Mishra VK, Huang AD, Dudoit S, Buter J, Cheng TY, Young DC, Nair YM, Ouellet IG, Griebel BT, Ma S, Sherman DR, Mallet L, Rhee KY, Minnaard AJ, Branch Moody D.	PLoS Biol	10.1371/journal.pbio.3002813	2024
Phylogeny	Shared Pathogenomic Patterns Characterize a New Phylotype, Revealing Transition toward Host-Adaptation Long before Speciation of Mycobacterium tuberculosis.	Sapriel G, Brosch R.	Genome Biol Evol	10.1093/gbe/evz162	2019
Genetics	Comparative Genomic and Transcriptomic Analyses of Mycobacterium kansasii Subtypes Provide New Insights Into Their Pathogenicity and Taxonomy.	Guan Q, Ummels R, Ben-Rached F, Alzahid Y, Amini MS, Adroub SA, van Ingen J, Bitter W, Abdallah AM, Pain A.	Front Cell Infect Microbiol	10.3389/fcimb.2020.00122	2020
	Insights into the ancestry evolution of the Mycobacterium tuberculosis complex from analysis of Mycobacterium riyadhense.	Guan Q, Garbati M, Mfarrej S, AlMutairi T, Laval T, Singh A, Fagbo S, Smyth A, Browne JA, urRahman MA, Alruwaili A, Hoosen A, Meehan CJ, Nakajima C, Suzuki Y, Demangel C, Bhatt A, Gordon SV, AlAsmari F, Pain A.	NAR Genom Bioinform	10.1093/nargab/lqab070	2021
Pathogenicity	Evolution and emergence of Mycobacterium tuberculosis.	Orgeur M, Sous C, Madacki J, Brosch R.	FEMS Microbiol Rev	10.1093/femsre/fuae006	2024
Phylogeny	Mycobacterium decipiens sp. nov., a new species closely related to the Mycobacterium tuberculosis complex.	Brown-Elliott BA, Simmer PJ, Trovato A, Hyle EP, Droz S, Buckwalter SP, Borroni E, Branda JA, Iana E, Mariottini A, Nelson J, Matteelli A, Toney NC, Scarparo C, de Man TJB, Vasireddy R, Gandhi RT, Wengenack NL, Cirillo DM, Wallace RJ, Tortoli E	Int J Syst Evol Microbiol	10.1099/ijsem.0.003031	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65101	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105360
#66742	Barbara A. Brown-Elliott, Patricia J. Simmer, Alberto Trovato, Emily P. Hyle, Sara Droz, Seanne P. Buckwalter, Emanuele Borroni, John A. Branda, Elkina Iana, Alessandro Mariottini, Jameelah Nelson, Alberto Matteelli, Nadege C. Toney, Claudio Scarparo, Tom J. B. de Man, Ravikiran Vasireddy, Rajesh T. Gandhi, Nancy L. Wengenack, Daniela M. Cirillo, Richard J. Wallace and Enrico Tortoli: Mycobacterium decipiens sp. nov., a new species closely related to the Mycobacterium tuberculosis complex. IJSEM 68: 3557 - 3562 2018 ( DOI 10.1099/ijsem.0.003031 , PubMed 30204586 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Mycobacterium decipiens (DSM 105360, TBL 1200985, ATCC TSD-117)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Observation

Metabolite utilization

Antibiotic resistance

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_963853665

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

Help

Social Media