Strain identifier

BacDive ID: 158354

Type strain: Yes

Species: Vibrio fujianensis

Strain Designation: FJ201301

Strain history: <- D. Wang; National Institute for Infectious Disease Control & Prevention, Chinese Center For Disease Control And Prevention, Beijing, P.R. CHINA; FJ201301 <- <-A. Chen

NCBI tax ID(s): 1974215 (species)

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General

@ref: 65030

BacDive-ID: 158354

DSM-Number: 104687

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped, colony-forming

description: Vibrio fujianensis FJ201301 is a facultative anaerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from aquaculture water.

NCBI tax id

  • NCBI tax id: 1974215
  • Matching level: species

strain history

  • @ref: 65030
  • history: <- D. Wang; National Institute for Infectious Disease Control & Prevention, Chinese Center For Disease Control And Prevention, Beijing, P.R. CHINA; FJ201301 <- <-A. Chen

doi: 10.13145/bacdive158354.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio fujianensis
  • full scientific name: Vibrio fujianensis Fang et al. 2018

@ref: 65030

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales, not validated

family: Vibrionaceae

genus: Vibrio

species: Vibrio fujianensis

full scientific name: Vibrio fujianensis Fang et al. 2018

strain designation: FJ201301

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangementconfidence
65375negative2-2.5 µm0.5-1 µmrod-shapedyespolar
69480negative99.974

colony morphology

@refcolony sizecolony colorcolony shapeincubation periodmedium used
653751-2 mmivorycircular2 daysLuria-Bertani agar
65375yellowthiosulfate-citrate-bile-sucrose agar

multimedia

  • @ref: 65030
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_104687.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
65030TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
65375LB (Luria-Bertani) MEDIUMyeswith 3% NaCl
65375thiosulfate-citrate-bile-sucrose agaryes

culture temp

@refgrowthtypetemperaturerange
65030positivegrowth28mesophilic
65375positivegrowth10-42
65375positiveoptimum30mesophilic

culture pH

@refabilitytypepHPH range
65375positivegrowth5-10alkaliphile
65375positiveoptimum8

Physiology and metabolism

oxygen tolerance

  • @ref: 65375
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69480no99.971
69481no100

halophily

@refsaltgrowthtested relationconcentration
65375NaClpositivegrowth1-10 %(w/v)
65375NaClpositiveoptimum3 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6537527613amygdalin-builds acid from
6537518305arbutin+builds acid from
6537527689decanoate-carbon source
65375casein-hydrolysis
6537517057cellobiose-builds acid from
6537515963ribitol-builds acid from
6537517108D-arabinose-builds acid from
6537518333D-arabitol-builds acid from
6537515824D-fructose+builds acid from
6537528847D-fucose-builds acid from
6537512936D-galactose+builds acid from
6537517634D-glucose+builds acid from
6537517634D-glucose+carbon source
6537562318D-lyxose-builds acid from
6537516899D-mannitol+builds acid from
6537516899D-mannitol+carbon source
6537516024D-mannose+builds acid from
6537516024D-mannose+carbon source
6537516988D-ribose+builds acid from
6537517924D-sorbitol+builds acid from
6537516443D-tagatose-builds acid from
6537565327D-xylose-builds acid from
6537516991dna+hydrolysis
6537516813galactitol-builds acid from
6537517113erythritol-builds acid from
653754853esculin+hydrolysis
65375esculin ferric citrate+builds acid from
653755291gelatin-hydrolysis
6537528066gentiobiose-builds acid from
6537517234glucose-fermentation
6537517234glucose+fermentation
6537517234glucose+oxidation
6537517754glycerol+builds acid from
6537528087glycogen-builds acid from
6537517268myo-inositol+builds acid from
6537515443inulin-builds acid from
6537530849L-arabinose-builds acid from
6537530849L-arabinose-carbon source
6537518403L-arabitol-builds acid from
6537518287L-fucose-builds acid from
6537562345L-rhamnose-builds acid from
6537517266L-sorbose-builds acid from
6537565328L-xylose-builds acid from
6537517716lactose-builds acid from
6537517306maltose+builds acid from
6537517306maltose+carbon source
653756731melezitose-builds acid from
6537528053melibiose-builds acid from
65375320061methyl alpha-D-glucopyranoside-builds acid from
6537543943methyl alpha-D-mannoside-builds acid from
6537574863methyl beta-D-xylopyranoside-builds acid from
65375506227N-acetylglucosamine+builds acid from
65375506227N-acetylglucosamine+carbon source
6537517632nitrate-reduction
65375potassium 2-dehydro-D-gluconate-builds acid from
65375potassium 5-dehydro-D-gluconate-builds acid from
6537532032potassium gluconate-builds acid from
6537532032potassium gluconate+carbon source
6537516634raffinose-builds acid from
6537517814salicin+builds acid from
6537553258sodium citrate+carbon source
6537528017starch+builds acid from
6537528017starch+hydrolysis
6537517992sucrose+builds acid from
6537527082trehalose+builds acid from
6537532528turanose-builds acid from
6537553424tween 20+hydrolysis
6537553423tween 40+hydrolysis
6537553426tween 80+hydrolysis
6537517151xylitol-builds acid from
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose+fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

@refChebi-IDmetaboliteproduction
6537515688acetoinyes
6537516136hydrogen sulfideno
6537535581indoleno
6836935581indoleno

metabolite tests

@refChebi-IDmetabolitemethylred-testvoges-proskauer-testindole test
6537517234glucose-
6537515688acetoin+
6836935581indole-

enzymes

@refvalueactivityec
65375cytochrome oxidase+1.9.3.1
65375catalase+1.11.1.6
65375arginine dihydrolase-3.5.3.6
65375lysine decarboxylase-4.1.1.18
65375ornithine decarboxylase-4.1.1.17
65375urease-3.5.1.5
65375beta-galactosidase-3.2.1.23
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
65030--+--+--+-+++++---+-+

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentlatitudelongitudesampling dategeographic locationenrichment cultureenrichment culture durationenrichment culture temperatureisolation procedure
65030aquaculture waterChinaCHNAsia26.1333119.467
65375aquaculture waterChinaCHNAsia26.1333119.4672013Fujianthiosulfate-citrate-bile-sucrose agar18 hours30A water sample (100 µl) was plated on to thiosulfate-citrate-bile-sucrose agar and incubated at 30°C for 18 h. The yellow colonies that grew were streaked and incubated on Luria-Bertani (LB; 3 %, w/v, NaCl) agar at 30°C for another 18 h.

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Aquaculture
#Environmental#Aquatic

Sequence information

16S sequences

  • @ref: 65030
  • description: Vibrio fujianensis strain FJ201301 16S ribosomal RNA gene, partial sequence
  • accession: KY951464
  • length: 1416
  • database: ena
  • NCBI tax ID: 1974215

Genome sequences

  • @ref: 66792
  • description: Vibrio fujianensis FJ201301
  • accession: GCA_002749895
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 1974215

GC content

  • @ref: 65375
  • GC-content: 43.4
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedyes87.956yes
gram-positiveno99.252yes
anaerobicno92.835yes
halophileno50no
spore-formingno96.352no
thermophileno97.098yes
glucose-utilyes89.939yes
aerobicyes52.373yes
motileyes90.154yes
glucose-fermentyes87.747no

External links

@ref: 65030

culture collection no.: DSM 104687, CGMCC 1.16099

straininfo link

  • @ref: 111159
  • straininfo: 405394

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny29458501Vibrio fujianensis sp. nov., isolated from aquaculture water.Fang Y, Chen A, Dai H, Huang Y, Kan B, Wang DInt J Syst Evol Microbiol10.1099/ijsem.0.0026422018*Aquaculture, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Genes, Bacterial, Multilocus Sequence Typing, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vibrio/*classification/genetics/isolation & purification, *Water MicrobiologyTranscriptome
Genetics32294952Comparative Genomics and Transcriptomics Analyses Reveal a Unique Environmental Adaptability of Vibrio fujianensis.Huang Z, Yu K, Fang Y, Dai H, Cai H, Li Z, Kan B, Wei Q, Wang DMicroorganisms10.3390/microorganisms80405552020

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65030Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-104687Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104687)
65375Yujie Fang, Aiping Chen, Hang Dai, Ying Huang, Biao Kan, Duochun WangVibrio fujianensis sp. nov., isolated from aquaculture water10.1099/ijsem.0.002642IJSEM 68: 1146-1152 201829458501
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
111159Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405394.1