Vibrio fujianensis (DSM 104687, CGMCC 1.16099, FJ201301)

Name: Vibrio fujianensis (DSM 104687, CGMCC 1.16099, FJ201301)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158354

Type strain

Strain Designation FJ201301

Culture col. no. DSM 104687 CGMCC 1.16099 FJ201301

NCBI tax ID(s) 1974215

Special Collections DSMZ Literature strains

History DSMZ <- D. Wang; National Institute for Infectious Disease Control & Prevention, Chinese Center For Disease Control And Prevention, Beijing, P.R. CHINA; FJ201301 <- <-A. Chen

Links

Vibrio fujianensis FJ201301 is a facultative anaerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from aquaculture water.

Gram-negative motile rod-shaped colony-forming facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 405394

DSM 104687

@ref 20215

Last LPSN update 2026-05-29 08:43:56

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Vibrio

Species Vibrio fujianensis

Full scientific name Vibrio fujianensis Fang et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
65375	negative	2-2.5 µm	0.5-1 µm	rod-shaped	polar
125438						94.015
125438	negative					100

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
65375	1-2 mm	ivory	circular	2 days	Luria-Bertani agar
65375		yellow			thiosulfate-citrate-bile-sucrose agar

Multimedia

@ref:	65030
multimedia content:	DSM_104687.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_104687.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
65030	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
65375	LB (Luria-Bertani) MEDIUM		with 3% NaCl
65375	thiosulfate-citrate-bile-sucrose agar

Culture temp

@ref	Growth	Type	Temperature (°C)
65030	positive	growth	28
65375	positive	growth	10-42
65375	positive	optimum	30

Culture pH

@ref	Ability	Type	PH	PH range
65375	positive	optimum	8
65375	positive	growth	5-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

65375

Oxygen tolerancefacultative anaerobe

Spore formation

@ref	Spore formation	Confidence
125438		93.55

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65375	NaCl	positive	growth	1-10 %(w/v)
65375	NaCl	positive	optimum	3 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
65375	27613 ChEBI	amygdalin	-	builds acid from
65375	18305 ChEBI	arbutin	+	builds acid from
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
65375		casein	-	hydrolysis
65375	17057 ChEBI	cellobiose	-	builds acid from
65375	17108 ChEBI	D-arabinose	-	builds acid from
65375	18333 ChEBI	D-arabitol	-	builds acid from
65375	15824 ChEBI	D-fructose	+	builds acid from
65375	28847 ChEBI	D-fucose	-	builds acid from
65375	12936 ChEBI	D-galactose	+	builds acid from
65375	17634 ChEBI	D-glucose	+	builds acid from
65375	17634 ChEBI	D-glucose	+	carbon source
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	+	fermentation	from API 20NE
65375	62318 ChEBI	D-lyxose	-	builds acid from
65375	16899 ChEBI	D-mannitol	+	builds acid from
65375	16899 ChEBI	D-mannitol	+	carbon source
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
65375	16024 ChEBI	D-mannose	+	builds acid from
65375	16024 ChEBI	D-mannose	+	carbon source
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
65375	16988 ChEBI	D-ribose	+	builds acid from
65375	17924 ChEBI	D-sorbitol	+	builds acid from
65375	16443 ChEBI	D-tagatose	-	builds acid from
65375	65327 ChEBI	D-xylose	-	builds acid from
65375	27689 ChEBI	decanoate	-	carbon source
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
65375	16991 ChEBI	dna	+	hydrolysis
65375	17113 ChEBI	erythritol	-	builds acid from
65375	4853 ChEBI	esculin	+	hydrolysis
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
65375		esculin ferric citrate	+	builds acid from
65375	16813 ChEBI	galactitol	-	builds acid from
65375	5291 ChEBI	gelatin	-	hydrolysis
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
65375	28066 ChEBI	gentiobiose	-	builds acid from
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
65375	17234 ChEBI	glucose	-	fermentation
65375	17234 ChEBI	glucose	+	fermentation
65375	17234 ChEBI	glucose	+	oxidation
65375	17754 ChEBI	glycerol	+	builds acid from
65375	28087 ChEBI	glycogen	-	builds acid from
65375	15443 ChEBI	inulin	-	builds acid from
65375	30849 ChEBI	L-arabinose	-	builds acid from
65375	30849 ChEBI	L-arabinose	-	carbon source
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
65375	18403 ChEBI	L-arabitol	-	builds acid from
65375	18287 ChEBI	L-fucose	-	builds acid from
65375	62345 ChEBI	L-rhamnose	-	builds acid from
65375	17266 ChEBI	L-sorbose	-	builds acid from
65375	65328 ChEBI	L-xylose	-	builds acid from
65375	17716 ChEBI	lactose	-	builds acid from
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
65375	17306 ChEBI	maltose	+	builds acid from
65375	17306 ChEBI	maltose	+	carbon source
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
65375	6731 ChEBI	melezitose	-	builds acid from
65375	28053 ChEBI	melibiose	-	builds acid from
65375	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from
65375	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
65375	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
65375	17268 ChEBI	myo-inositol	+	builds acid from
65375	506227 ChEBI	N-acetylglucosamine	+	builds acid from
65375	506227 ChEBI	N-acetylglucosamine	+	carbon source
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
65375	17632 ChEBI	nitrate	-	reduction
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
65375		potassium 2-dehydro-D-gluconate	-	builds acid from
65375		potassium 5-dehydro-D-gluconate	-	builds acid from
65375	32032 ChEBI	potassium gluconate	-	builds acid from
65375	32032 ChEBI	potassium gluconate	+	carbon source
65375	16634 ChEBI	raffinose	-	builds acid from
65375	15963 ChEBI	ribitol	-	builds acid from
65375	17814 ChEBI	salicin	+	builds acid from
65375	53258 ChEBI	sodium citrate	+	carbon source
65375	28017 ChEBI	starch	+	builds acid from
65375	28017 ChEBI	starch	+	hydrolysis
65375	17992 ChEBI	sucrose	+	builds acid from
65375	27082 ChEBI	trehalose	+	builds acid from
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
65375	32528 ChEBI	turanose	-	builds acid from
65375	53424 ChEBI	tween 20	+	hydrolysis
65375	53423 ChEBI	tween 40	+	hydrolysis
65375	53426 ChEBI	tween 80	+	hydrolysis
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
65375	17151 ChEBI	xylitol	-	builds acid from

Metabolite production

@ref	Chebi-ID	Metabolite
65375	15688 ChEBI	acetoin
65375	16136 ChEBI	hydrogen sulfide
65375	35581 ChEBI	indole
68369	35581 ChEBI	indole	from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test	Voges-proskauer-test	Methylred-test
65375	15688 ChEBI	acetoin		+
65375	17234 ChEBI	glucose			-
68369	35581 ChEBI	indole	-			from API 20NE

Enzymes

@ref	Value	Activity	Ec
65375	arginine dihydrolase	-	3.5.3.6
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
65375	beta-galactosidase	-	3.2.1.23
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
65375	catalase	+	1.11.1.6
65375	cytochrome oxidase	+	1.9.3.1
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68369	gelatinase	-		from API 20NE
65375	lysine decarboxylase	-	4.1.1.18
65375	ornithine decarboxylase	-	4.1.1.17
65375	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
65030	-	-	+	-	-	+	-	-	+	-	+	+	+	+	+	-	-	-	+	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Aquaculture
#Environmental	#Aquatic	-

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
65030	aquaculture water			China	CHN	Asia	26.1333	119.467 26.1333/119.467
65375	aquaculture water	2013	Fujian	China	CHN	Asia	26.1333	119.467 26.1333/119.467	thiosulfate-citrate-bile-sucrose agar	18 hours	30	A water sample (100 µl) was plated on to thiosulfate-citrate-bile-sucrose agar and incubated at 30°C for 18 h. The yellow colonies that grew were streaked and incubated on Luria-Bertani (LB; 3 %, w/v, NaCl) agar at 30°C for another 18 h.

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM274989v1 assembly for Vibrio fujianensis FJ201301	scaffold	GCA_002749895	1974215.3	2997361373	1974215	0

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65030	Vibrio fujianensis strain FJ201301 16S ribosomal RNA gene, partial sequence	KY951464	1416		1974215

GC content

@ref	GC-content (mol%)	Method
65375	43.4	genome sequence analysis

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vibrio fujianensis FJ201301
NCBI: GCA_002749895.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	yes
125438	anaerobic	anaerobicⓘ	no	89.71	yes
125438	aerobic	aerobicⓘ	no	74.11	yes
125438	spore-forming	spore-formingⓘ	no	93.55	no
125438	thermophilic	thermophileⓘ	no	97.55	yes
125438	flagellated	motile2+ⓘ	yes	94.02	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Comparative Genomics and Transcriptomics Analyses Reveal a Unique Environmental Adaptability of Vibrio fujianensis.	Huang Z, Yu K, Fang Y, Dai H, Cai H, Li Z, Kan B, Wei Q, Wang D	Microorganisms	10.3390/microorganisms8040555	2020
Phylogeny	Vibrio fujianensis sp. nov., isolated from aquaculture water.	Fang Y, Chen A, Dai H, Huang Y, Kan B, Wang D	Int J Syst Evol Microbiol	10.1099/ijsem.0.002642	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65030	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104687
#65375	Yujie Fang, Aiping Chen, Hang Dai, Ying Huang, Biao Kan, Duochun Wang: Vibrio fujianensis sp. nov., isolated from aquaculture water. IJSEM 68: 1146 - 1152 2018 ( DOI 10.1099/ijsem.0.002642 , PubMed 29458501 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

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Vibrio fujianensis (DSM 104687, CGMCC 1.16099, FJ201301)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002749895

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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