Name: Vibrio fujianensis FJ201301
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158354

Type strain:

Species: Vibrio fujianensis

Strain Designation: FJ201301

Culture col. no.: DSM 104687, CGMCC 1.16099

Strain history: <- D. Wang; National Institute for Infectious Disease Control & Prevention, Chinese Center For Disease Control And Prevention, Beijing, P.R. CHINA; FJ201301 <- <-A. Chen

NCBI tax ID(s): 1974215 (species)

SI-ID 405394

DSM 104687

Section

Vibrio fujianensis FJ201301 is a facultative anaerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from aquaculture water.

colony-forming
Gram-negative
motile
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Vibrio*
	Species	**Vibrio fujianensis**
	Full Scientific Name (LPSN)	Vibrio fujianensis Fang et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65375]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.974

[Ref.: #65375]	Cell length	2-2.5 µm

[Ref.: #65375]	Cell width	0.5-1 µm

[Ref.: #65375]	Cell shape	rod-shaped

[Ref.: #65375]	Motility	yes

[Ref.: #65375]	Flagellum arrangement	polar

[Ref.: #65375]	Colony size	1-2 mm
[Ref.: #65375]	Colony color	ivory
[Ref.: #65375]	Colony shape	circular
[Ref.: #65375]	Incubation period	2 days
[Ref.: #65375]	Cultivation medium used	Luria-Bertani agar

[Ref.: #65375]	Colony color	yellow
[Ref.: #65375]	Cultivation medium used	thiosulfate-citrate-bile-sucrose agar

Multimedia content

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65030]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #65030]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

[Ref.: #65375]

Culture medium composition

expand / minimize

[Ref.: #65375]

Culture medium

thiosulfate-citrate-bile-sucrose agar

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Culture medium growth

		Temperature
[Ref.: #65030]	growth	28 °C
[Ref.: #65375]	growth	10-42 °C
[Ref.: #65375]	optimum	30 °C

[Ref.: #65030]	Temperature range	mesophilic
[Ref.: #65375]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #65375]			optimum	8
[Ref.: #65375]			growth	5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65375]

Oxygen tolerance

facultative anaerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.971
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65375]		NaCl		growth	1-10	%(w/v)
[Ref.: #65375]		NaCl		optimum	3	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #65375]	amygdalin ChEBI	-	builds acid from
[Ref.: #65375]	arbutin ChEBI	+	builds acid from
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #65375]	casein	-	hydrolysis
[Ref.: #65375]	cellobiose ChEBI	-	builds acid from
[Ref.: #65375]	D-arabinose ChEBI	-	builds acid from
[Ref.: #65375]	D-arabitol ChEBI	-	builds acid from
[Ref.: #65375]	D-fructose ChEBI	+	builds acid from
[Ref.: #65375]	D-fucose ChEBI	-	builds acid from
[Ref.: #65375]	D-galactose ChEBI	+	builds acid from
[Ref.: #65375]	D-glucose ChEBI	+	builds acid from
[Ref.: #65375]	D-glucose ChEBI	+	carbon source
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	fermentation	* from API 20NE
[Ref.: #65375]	D-lyxose ChEBI	-	builds acid from
[Ref.: #65375]	D-mannitol ChEBI	+	builds acid from
[Ref.: #65375]	D-mannitol ChEBI	+	carbon source
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #65375]	D-mannose ChEBI	+	builds acid from
[Ref.: #65375]	D-mannose ChEBI	+	carbon source
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #65375]	D-ribose ChEBI	+	builds acid from
[Ref.: #65375]	D-sorbitol ChEBI	+	builds acid from
[Ref.: #65375]	D-tagatose ChEBI	-	builds acid from
[Ref.: #65375]	D-xylose ChEBI	-	builds acid from
[Ref.: #65375]	decanoate ChEBI	-	carbon source
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #65375]	dna ChEBI	+	hydrolysis
[Ref.: #65375]	erythritol ChEBI	-	builds acid from
[Ref.: #65375]	esculin ChEBI	+	hydrolysis
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #65375]	esculin ferric citrate	+	builds acid from
[Ref.: #65375]	galactitol ChEBI	-	builds acid from
[Ref.: #65375]	gelatin ChEBI	-	hydrolysis
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #65375]	gentiobiose ChEBI	-	builds acid from
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #65375]	glucose ChEBI	-	fermentation
[Ref.: #65375]	glucose ChEBI	+	fermentation
[Ref.: #65375]	glucose ChEBI	+	oxidation
[Ref.: #65375]	glycerol ChEBI	+	builds acid from
[Ref.: #65375]	glycogen ChEBI	-	builds acid from
[Ref.: #65375]	inulin ChEBI	-	builds acid from
[Ref.: #65375]	L-arabinose ChEBI	-	builds acid from
[Ref.: #65375]	L-arabinose ChEBI	-	carbon source
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #65375]	L-arabitol ChEBI	-	builds acid from
[Ref.: #65375]	L-fucose ChEBI	-	builds acid from
[Ref.: #65375]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #65375]	L-sorbose ChEBI	-	builds acid from
[Ref.: #65375]	L-xylose ChEBI	-	builds acid from
[Ref.: #65375]	lactose ChEBI	-	builds acid from
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #65375]	maltose ChEBI	+	builds acid from
[Ref.: #65375]	maltose ChEBI	+	carbon source
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #65375]	melezitose ChEBI	-	builds acid from
[Ref.: #65375]	melibiose ChEBI	-	builds acid from
[Ref.: #65375]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #65375]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #65375]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #65375]	myo-inositol ChEBI	+	builds acid from
[Ref.: #65375]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #65375]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #65375]	nitrate ChEBI	-	reduction
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #65375]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #65375]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #65375]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #65375]	potassium gluconate ChEBI	+	carbon source
[Ref.: #65375]	raffinose ChEBI	-	builds acid from
[Ref.: #65375]	ribitol ChEBI	-	builds acid from
[Ref.: #65375]	salicin ChEBI	+	builds acid from
[Ref.: #65375]	sodium citrate ChEBI	+	carbon source
[Ref.: #65375]	starch ChEBI	+	builds acid from
[Ref.: #65375]	starch ChEBI	+	hydrolysis
[Ref.: #65375]	sucrose ChEBI	+	builds acid from
[Ref.: #65375]	trehalose ChEBI	+	builds acid from
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #65375]	turanose ChEBI	-	builds acid from
[Ref.: #65375]	tween 20 ChEBI	+	hydrolysis
[Ref.: #65375]	tween 40 ChEBI	+	hydrolysis
[Ref.: #65375]	tween 80 ChEBI	+	hydrolysis
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #65375]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #65375]	acetoin ChEBI	yes
[Ref.: #65375]	hydrogen sulfide ChEBI	no
[Ref.: #65375]	indole ChEBI	no
[Ref.: #68369]	indole ChEBI	no	* from API 20NE

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #65375]	acetoin ChEBI	+
[Ref.: #65375]	glucose ChEBI		-
[Ref.: #68369]	indole ChEBI			-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #65375]	arginine dihydrolase	-	3.5.3.6
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #65375]	beta-galactosidase	-	3.2.1.23
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #65375]	catalase	+	1.11.1.6
[Ref.: #65375]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #65375]	lysine decarboxylase	-	4.1.1.18
[Ref.: #65375]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #65375]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #65030]	24551	-	-	+	-	-	+	-	-	+	-	+	+	+	+	+	-	-	-	+	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65030]	Sample type/isolated from	aquaculture water
[Ref.: #65030]	Country	China
[Ref.: #65030]	Country ISO 3 Code	CHN
[Ref.: #65030]	Continent	Asia
[Ref.: #65030]	Geographic location	26.1333°/119.4670°

[Ref.: #65375]	Sample type/isolated from	aquaculture water
[Ref.: #65375]	Sampling date	2013
[Ref.: #65375]	Geographic location (country and/or sea, region)	Fujian
[Ref.: #65375]	Country	China
[Ref.: #65375]	Country ISO 3 Code	CHN
[Ref.: #65375]	Continent	Asia
[Ref.: #65375]	Geographic location	26.1333°/119.4670°
[Ref.: #65375]	Enrichment culture	thiosulfate-citrate-bile-sucrose agar
[Ref.: #65375]	Enrichment culture duration	18 hours
[Ref.: #65375]	Enrichment culture temperature	30 ̊C
[Ref.: #65375]	Isolation/enrichment procedure	A water sample (100 µl) was plated on to thiosulfate-citrate-bile-sucrose agar and incubated at 30°C for 18 h. The yellow colonies that grew were streaked and incubated on Luria-Bertani (LB; 3 %, w/v, NaCl) agar at 30°C for another 18 h.
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Aquaculture
#Environmental	#Aquatic	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65030]	Vibrio fujianensis strain FJ201301 16S ribosomal RNA gene, partial sequence	KY951464	1416	ENA	1974215 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Vibrio fujianensis FJ201301	GCA_002749895	scaffold	GenBank	1974215 tax ID	*

[Ref.: #65375]

GC-content

43.4 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Vibrio fujianensis FJ201301 NCBI: GCA_002749895.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Vibrio fujianensis FJ201301 NCBI: GCA_002749895.1
[Ref.: #69480]	flagellated	yes	87.956	yes
[Ref.: #69480]	gram-positive	no	99.252	yes
[Ref.: #69480]	anaerobic	no	92.835	yes
[Ref.: #69480]	halophile	no	50	no
[Ref.: #69480]	spore-forming	no	96.352	no
[Ref.: #69480]	thermophile	no	97.098	yes
[Ref.: #69480]	glucose-util	yes	89.939	yes
[Ref.: #69480]	aerobic	yes	52.373	yes
[Ref.: #69480]	motile	yes	90.154	yes
[Ref.: #69480]	glucose-ferment	yes	87.747	no

Availability in culture collections External links

[Ref.: #65030]

Culture collection no.

DSM 104687, CGMCC 1.16099

[Ref.: #111159]

SI-ID 405394

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Comparative Genomics and Transcriptomics Analyses Reveal a Unique Environmental Adaptability of Vibrio fujianensis.	Huang Z, Yu K, Fang Y, Dai H, Cai H, Li Z, Kan B, Wei Q, Wang D	Microorganisms	10.3390/microorganisms8040555	2020	*
Phylogeny	Vibrio fujianensis sp. nov., isolated from aquaculture water.	Fang Y, Chen A, Dai H, Huang Y, Kan B, Wang D	Int J Syst Evol Microbiol	10.1099/ijsem.0.002642	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65030

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104687

#65375

Yujie Fang, Aiping Chen, Hang Dai, Ying Huang, Biao Kan, Duochun Wang: Vibrio fujianensis sp. nov., isolated from aquaculture water. IJSEM 68: 1146 - 1152 2018 ( DOI 10.1099/ijsem.0.002642 , PubMed 29458501 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111159

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405394.1 )

* These data were automatically processed and therefore are not curated

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