Strain identifier
BacDive ID: 158310
Type strain: 
Species: Caballeronia mineralivorans
Strain Designation: PML1(12)
Strain history: <- S. Uroz, INRA UMR1136, Champenoux, France; PML1(12) <- P. Frey-Klett
NCBI tax ID(s): 2010198 (species)
General
@ref: 64974
BacDive-ID: 158310
DSM-Number: 104028
keywords: genome sequence, Bacteria, mesophilic
description: Caballeronia mineralivorans PML1 is a mesophilic bacterium that was isolated from Ectomycorrhizosphere of oak Scleroderma citrinum sampled in the mineral soil horizon .
NCBI tax id
- NCBI tax id: 2010198
- Matching level: species
strain history
- @ref: 64974
- history: <- S. Uroz, INRA UMR1136, Champenoux, France; PML1(12) <- P. Frey-Klett
doi: 10.13145/bacdive158310.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Burkholderiaceae
- genus: Caballeronia
- species: Caballeronia mineralivorans
- full scientific name: Caballeronia mineralivorans Uroz and Oger 2019
@ref: 64974
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Burkholderiaceae
genus: Caballeronia
species: Caballeronia mineralivorans
full scientific name: Caballeronia mineralivorans Uroz and Oger
strain designation: PML1(12)
type strain: no
Culture and growth conditions
culture medium
- @ref: 64974
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 64974
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 64974
- sample type: Ectomycorrhizosphere of oak Scleroderma citrinum sampled in the mineral soil horizon (5-110cm)
- geographic location: Morvan, Breuil-Chenue experimental site (47° 17' 31''N, 4° 03' 54''E)
- country: France
- origin.country: FRA
- continent: Europe
- latitude: 47.2919
- longitude: 4.065
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Fungi | #Mushroom |
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Tree |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Caballeronia mineralivorans PML1(12) | GCA_001028175 | contig | ncbi | 908627 |
| 66792 | Caballeronia mineralivorans PML1(12) | 2627853681 | draft | img | 908627 |
External links
@ref: 64974
culture collection no.: DSM 104028, LMG 2991
straininfo link
- @ref: 111124
- straininfo: 404456
literature
- topic: Phylogeny
- Pubmed-ID: 28688535
- title: Caballeronia mineralivorans sp. nov., isolated from oak-Scleroderma citrinum mycorrhizosphere.
- authors: Uroz S, Oger P
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2017.05.005
- year: 2017
- mesh: Base Composition, Burkholderia/*classification/genetics/*isolation & purification/metabolism, Fatty Acids/chemistry/metabolism, *Mycorrhizae, Phylogeny, Quercus/*microbiology, RNA, Bacterial, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology
- topic2: Metabolism
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 64974 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-104028 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104028) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 111124 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404456.1 |