General

@ref: 64770

BacDive-ID: 158177

DSM-Number: 25799

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Catenisphaera adipataccumulans GK12 is an anaerobe, mesophilic bacterium that was isolated from anaerobic methanogenic digester fed with food waste.

NCBI tax id

• NCBI tax id: 700500
• Matching level: species

strain history

• @ref: 64770
• history: <- Taiki Katayama, Manabu Kanno, Natl. Inst. Advanced Industrial Sci. and Technol., Tsukuba, Japan; GK12

doi: 10.13145/bacdive158177.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/bacillota
• domain: Bacteria
• phylum: Bacillota
• class: Erysipelotrichia
• order: Erysipelotrichales
• family: Erysipelotrichaceae
• genus: Catenisphaera
• species: Catenisphaera adipataccumulans
• full scientific name: Catenisphaera adipataccumulans Kanno et al. 2015

@ref: 64770

domain: Bacteria

phylum: Firmicutes

class: Erysipelotrichia

order: Erysipelotrichales

family: Erysipelotrichaceae

genus: Catenisphaera

species: Catenisphaera adipataccumulans

full scientific name: Catenisphaera adipataccumulans Kanno et al. 2015

strain designation: GK12

type strain: yes

Morphology

cell morphology

Culture and growth conditions

culture medium

• @ref: 64770
• name: PYG MEDIUM (MODIFIED) (DSMZ Medium 104)
• growth: yes
• link: https://mediadive.dsmz.de/medium/104
• composition: Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water

culture temp

• @ref: 64770
• growth: positive
• type: growth
• temperature: 37
• range: mesophilic

Physiology and metabolism

oxygen tolerance

• @ref: 69480
• oxygen tolerance: anaerobe
• confidence: 99.44

spore formation

Isolation, sampling and environmental information

isolation

• @ref: 64770
• sample type: anaerobic methanogenic digester fed with food waste
• geographic location: Hokkaido Prefecture, Hukagawa
• country: Japan
• origin.country: JPN
• continent: Asia

isolation source categories

Safety information

risk assessment

• @ref: 64770
• biosafety level: 1
• biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

• @ref: 64770
• description: Catenisphaera adipataccumulans gene for 16S rRNA, partial sequence
• accession: AB537978
• length: 1419
• database: ena
• NCBI tax ID: 700500

Genome sequences

GC content

• @ref: 64770
• GC-content: 47.7
• method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

External links

@ref: 64770

culture collection no.: DSM 25799, NBRC 108915

straininfo link

• @ref: 111008
• straininfo: 398012

literature

• topic: Phylogeny
• Pubmed-ID: 25481294
• title: Catenisphaera adipataccumulans gen. nov., sp. nov., a member of the family Erysipelotrichaceae isolated from an anaerobic digester.
• authors: Kanno M, Katayama T, Morita N, Tamaki H, Hanada S, Kamagata Y
• journal: Int J Syst Evol Microbiol
• DOI: 10.1099/ijs.0.000021
• year: 2014
• mesh: Bacteria, Anaerobic/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Bioreactors/microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermentation, Gram-Positive Rods/*classification/genetics/isolation & purification, Japan, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
• topic2: Enzymology

Reference