Strain identifier
BacDive ID: 158121
Type strain: 
Species: Halomonas sp.
Strain Designation: G5-11
Strain history: <- L. Wang, China Agric. Univ., College Biol. Sci., Beijing; G5-11
NCBI tax ID(s): 1486246 (species)
version 9.3 (current version)
General
@ref: 64700
BacDive-ID: 158121
DSM-Number: 25419
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Halomonas sp. G5-11 is a mesophilic, Gram-negative bacterium that was isolated from salsa rhizosphere, Haishuo Saltern.
NCBI tax id
- NCBI tax id: 1486246
- Matching level: species
strain history
- @ref: 64700
- history: <- L. Wang, China Agric. Univ., College Biol. Sci., Beijing; G5-11
doi: 10.13145/bacdive158121.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Oceanospirillales
- family: Halomonadaceae
- genus: Halomonas
- species: Halomonas sp.
- full scientific name: Halomonas Vreeland et al. 1980
synonyms
@ref synonym 20215 Bisbaumannia 20215 Vreelandella 20215 Onishia 20215 Franzmannia 20215 Deleya 20215 Billgrantia 20215 Litchfieldella 20215 Volcaniella
@ref: 64700
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Halomonadaceae
genus: Halomonas
species: Halomonas sp.
full scientific name: Halomonas sp.
strain designation: G5-11
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 125438 | negative | 99 | |
| 125439 | 90.7 | yes | |
| 125439 | negative | 99.6 |
Culture and growth conditions
culture medium
- @ref: 64700
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 64700
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
spore formation
- @ref: 125439
- spore formation: no
- confidence: 99.7
Isolation, sampling and environmental information
isolation
- @ref: 64700
- sample type: salsa rhizosphere, Haishuo Saltern
- geographic location: LiaoNing province
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
- Cat1: #Host Body-Site
- Cat2: #Plant
- Cat3: #Rhizosphere
Sequence information
16S sequences
- @ref: 64700
- description: Halomonas sp. G5-11 16S ribosomal RNA gene, partial sequence
- accession: JQ010842
- length: 1507
- database: nuccore
- NCBI tax ID: 1158993
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Halomonas salinarum G5-11 | GCA_012062845 | contig | ncbi | 1158993 |
| 66792 | Halomonas sp. G5-11 | 1158993.4 | wgs | patric | 1158993 |
| 66792 | Halomonas sp. G5-11 | 2902724392 | draft | img | 1158993 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate anaerobe | 71.9 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 99.6 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 90.7 | |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 99.7 | |
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 99 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 87.374 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 88.808 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 71.999 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 92.286 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 72.128 | no |
External links
@ref: 64700
culture collection no.: DSM 25419
straininfo link
- @ref: 110958
- straininfo: 406956
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 64700 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25419 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25419) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 110958 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406956.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |