Strain identifier
BacDive ID: 158073
Type strain: 
Species: Phaeobacter inhibens
Strain Designation: P10, 01/009
Strain history: <- H. Freese, Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH; P10 <- J. L. Nicolas, Centre de Bretagne, IFREMER; 01/009
NCBI tax ID(s): 221822 (species)
version 9.1 (current version)
General
@ref: 64647
BacDive-ID: 158073
DSM-Number: 29965
keywords: genome sequence, Bacteria, Gram-negative
description: Phaeobacter inhibens P10 is a Gram-negative bacterium that was isolated from aluminum hull of sailboat.
NCBI tax id
- NCBI tax id: 221822
- Matching level: species
strain history
- @ref: 64647
- history: <- H. Freese, Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH; P10 <- J. L. Nicolas, Centre de Bretagne, IFREMER; 01/009
doi: 10.13145/bacdive158073.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Roseobacteraceae
- genus: Phaeobacter
- species: Phaeobacter inhibens
- full scientific name: Phaeobacter inhibens Martens et al. 2006
@ref: 64647
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Phaeobacter
species: Phaeobacter inhibens
full scientific name: Phaeobacter inhibens Martens et al. 2006 emend. Vandecandelaere et al. 2008 emend. Dogs et al. 2013
strain designation: P10, 01/009
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 98.333
Culture and growth conditions
culture medium
- @ref: 64647
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 64647
- growth: positive
- type: growth
- temperature: 25
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 90.216
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | + | assimilation |
| 68369 | 27689 | decanoate | - | assimilation |
| 68369 | 24265 | gluconate | - | assimilation |
| 68369 | 17306 | maltose | + | assimilation |
| 68369 | 59640 | N-acetylglucosamine | + | assimilation |
| 68369 | 16899 | D-mannitol | + | assimilation |
| 68369 | 16024 | D-mannose | + | assimilation |
| 68369 | 30849 | L-arabinose | - | assimilation |
| 68369 | 17634 | D-glucose | + | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 16199 | urea | - | hydrolysis |
| 68369 | 29016 | arginine | - | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68369 | cytochrome oxidase | + | 1.9.3.1 |
| 68369 | gelatinase | - | |
| 68369 | urease | - | 3.5.1.5 |
| 68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64647 | - | - | - | - | - | +/- | - | + | + | - | + | + | + | + | - | - | +/- | + | + | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 64647
- sample type: aluminum hull of sailboat
- geographic location: near the Ifremer centre in St Anne du Portzic port (Bay of Brest)
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
- Cat1: #Engineered
- Cat2: #Industrial
- Cat3: #Engineered product
Safety information
risk assessment
- @ref: 64647
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Phaeobacter inhibens P10
- accession: GCA_002888685
- assembly level: complete
- database: ncbi
- NCBI tax ID: 221822
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 98.333 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 94.667 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 82.843 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 90.216 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 98.448 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 71.207 | no |
External links
@ref: 64647
culture collection no.: DSM 29965
straininfo link
- @ref: 110916
- straininfo: 403078
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 64647 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29965 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29965) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68369 | Automatically annotated from API 20NE | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 110916 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403078.1 |