Strain identifier
BacDive ID: 158057
Type strain: 
Species: Bacteroides intestinalis
Strain Designation: APC919/174
Strain history: <- B. Fitzgerald, APC Microbiome University College Cork; APC919/174
NCBI tax ID(s): 329854 (species)
version 9.1 (current version)
General
@ref: 64631
BacDive-ID: 158057
DSM-Number: 108646
keywords: genome sequence, Bacteria, anaerobe, human pathogen
description: Bacteroides intestinalis APC919/174 is an anaerobe human pathogen that was isolated from Human faeces.
NCBI tax id
- NCBI tax id: 329854
- Matching level: species
strain history
- @ref: 64631
- history: <- B. Fitzgerald, APC Microbiome University College Cork; APC919/174
doi: 10.13145/bacdive158057.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Bacteroidaceae
- genus: Bacteroides
- species: Bacteroides intestinalis
- full scientific name: Bacteroides intestinalis Bakir et al. 2006
@ref: 64631
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Bacteroidaceae
genus: Bacteroides
species: Bacteroides intestinalis
full scientific name: Bacteroides intestinalis Bakir et al. 2006 emend. Hahnke et al. 2016
strain designation: APC919/174
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 91.935
Culture and growth conditions
culture medium
- @ref: 64631
- name: PYG MEDIUM (MODIFIED) (DSMZ Medium 104)
- growth: yes
- link: https://mediadive.dsmz.de/medium/104
- composition: Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
culture temp
- @ref: 64631
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: anaerobe
- confidence: 92.301
Isolation, sampling and environmental information
isolation
- @ref: 64631
- sample type: Human faeces
- geographic location: APC institute, University college Cork, Cork.
- country: Ireland
- origin.country: IRL
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Safety information
risk assessment
- @ref: 64631
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Bacteroides intestinalis APC919/174
- accession: GCA_003363675
- assembly level: complete
- database: ncbi
- NCBI tax ID: 329854
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 91.935 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 92.301 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 92.686 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 88.029 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 93.311 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 88.5 | no |
External links
@ref: 64631
culture collection no.: DSM 108646
straininfo link
- @ref: 110901
- straininfo: 405344
phages
- @ref: 124042
- name: Bacteroides phage vB_BinP-crASS001
- strain number: DSM 108646
- link: https://phagedive.dsmz.de/strain/885
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 64631 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-108646 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 108646) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 110901 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405344.1 | |
| 124042 | Dr. Johannes Wittmann, Dr. Clara Rolland, Dr. Lorenz Reimer, Joaquim Sardà | PhageDive | https://phagedive.dsmz.de/ |