Strain identifier
BacDive ID: 1576
Type strain: 
Species: Halobacteriovorax marinus
Strain Designation: SJ
Strain history: <- H. N. Williams, University of Maryland, Baltimore, USA; SJ <- H. N. Williams {1993}
NCBI tax ID(s): 97084 (species)
version 8.1 (current version)
General
@ref: 5801
BacDive-ID: 1576
DSM-Number: 15412
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Halobacteriovorax marinus SJ is a mesophilic bacterium that was isolated from ocean water.
NCBI tax id
- NCBI tax id: 97084
- Matching level: species
strain history
- @ref: 5801
- history: <- H. N. Williams, University of Maryland, Baltimore, USA; SJ <- H. N. Williams {1993}
doi: 10.13145/bacdive1576.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Oligoflexia
- order: Bacteriovoracales
- family: Halobacteriovoracaceae
- genus: Halobacteriovorax
- species: Halobacteriovorax marinus
- full scientific name: Halobacteriovorax marinus (Baer et al. 2004) Koval et al. 2015
synonyms
- @ref: 20215
- synonym: Bacteriovorax marinus
@ref: 5801
domain: Bacteria
phylum: Proteobacteria
class: Oligoflexia
order: Bdellovibrionales
family: Halobacteriovoraceae
genus: Halobacteriovorax
species: Halobacteriovorax marinus
full scientific name: Halobacteriovorax marinus (Baer et al. 2004) Koval et al. 2015
strain designation: SJ
type strain: yes
Culture and growth conditions
culture medium
- @ref: 5801
- name: HALOBACTERIOVORAX MEDIUM (DSMZ Medium 1013)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1013
- composition: Name: HALOBACTERIOVORAX MEDIUM (DSMZ Medium 1013) Composition: MgCl2 x 6 H2O 3.81188 g/l KCl 0.450495 g/l NaBr 0.0693069 g/l MgSO4 x 7 H2O 0.029703 g/l Nitrilotriacetic acid 0.0148515 g/l SrCl2 x 6 H2O 0.010396 g/l NaCl 0.00990099 g/l Citric acid 0.00693069 g/l MnSO4 x H2O 0.00495049 g/l ZnSO4 x 7 H2O 0.00178218 g/l CoSO4 x 7 H2O 0.00178218 g/l CaCl2 x 2 H2O 0.000990099 g/l FeSO4 x 7 H2O 0.000990099 g/l NiCl2 x 6 H2O 0.00029703 g/l AlK(SO4)2 x 12 H2O 0.00019802 g/l CuSO4 x 5 H2O 9.90099e-05 g/l H3BO3 9.90099e-05 g/l Na2MoO4 x 2 H2O 9.90099e-05 g/l KI 3.46535e-05 g/l Na2WO4 x 2 H2O 3.9604e-06 g/l Na2SeO3 x 5 H2O 2.9703e-06 g/l Distilled water
culture temp
- @ref: 5801
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 5801
- sample type: ocean water
- geographic location: Virgin Islands, St. Johns Island
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_3157.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15993;96_1646;97_1969;98_2421;99_3157&stattab=map
- Last taxonomy: Halobacteriovorax marinus subclade
- 16S sequence: AF084854
- Sequence Identity:
- Total samples: 1029
- soil counts: 61
- aquatic counts: 954
- animal counts: 14
Safety information
risk assessment
- @ref: 5801
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5801
- description: Bdellovibrio sp. SJ 16S ribosomal RNA gene, partial sequence
- accession: AF084854
- length: 1464
- database: ena
- NCBI tax ID: 862908
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Halobacteriovorax marinus SJ | GCA_000210915 | complete | ncbi | 862908 |
| 66792 | Halobacteriovorax marinus SJ | 862908.12 | plasmid | patric | 862908 |
| 66792 | Halobacteriovorax marinus SJ | 2563366500 | complete | img | 862908 |
GC content
- @ref: 5801
- GC-content: 37.7-38.3
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 91.41 | no |
| flagellated | no | 53.011 | no |
| gram-positive | no | 99.059 | no |
| anaerobic | no | 97.807 | no |
| aerobic | yes | 79.274 | no |
| halophile | no | 58.288 | no |
| spore-forming | no | 92.082 | no |
| thermophile | no | 97.094 | no |
| glucose-util | yes | 68.365 | no |
| glucose-ferment | no | 93.576 | no |
External links
@ref: 5801
culture collection no.: DSM 15412, ATCC BAA 682
straininfo link
- @ref: 71221
- straininfo: 132776
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 15280263 | Reclassification of salt-water Bdellovibrio sp. as Bacteriovorax marinus sp. nov. and Bacteriovorax litoralis sp. nov. | Baer ML, Ravel J, Pineiro SA, Guether-Borg D, Williams HN | Int J Syst Evol Microbiol | 10.1099/ijs.0.02458-0 | 2004 | Bacterial Typing Techniques, Base Composition, Bdellovibrio/*classification, DNA, Bacterial/chemistry, DNA, Ribosomal/chemistry, Deltaproteobacteria/*classification/genetics/physiology, Genes, rRNA, Microbial Sensitivity Tests, Molecular Sequence Data, Nucleic Acid Hybridization, Osmotic Pressure, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA | Genetics |
| Phylogeny | 25406234 | Reclassification of Bacteriovorax marinus as Halobacteriovorax marinus gen. nov., comb. nov. and Bacteriovorax litoralis as Halobacteriovorax litoralis comb. nov.; description of Halobacteriovoraceae fam. nov. in the class Deltaproteobacteria. | Koval SF, Williams HN, Stine OC | Int J Syst Evol Microbiol | 10.1099/ijs.0.070201-0 | 2014 | Bacterial Typing Techniques, DNA, Bacterial/genetics, Deltaproteobacteria/*classification, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5801 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15412) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15412 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 71221 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID132776.1 | StrainInfo: A central database for resolving microbial strain identifiers |