Halobacteriovorax marinus (DSM 15412, ATCC BAA-682, SJ)

Name: Halobacteriovorax marinus (DSM 15412, ATCC BAA-682, SJ)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1576

Type strain

Strain Designation SJ

Culture col. no. DSM 15412 ATCC BAA-682 SJ

NCBI tax ID(s) 97084

Special Collections DSMZ

Links

Halobacteriovorax marinus SJ is a mesophilic prokaryote that was isolated from ocean water.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 132776

ATCC BAA-682,DSM 15412

@ref 20215

Last LPSN update 2025-12-16 09:47:08

Domain Pseudomonadati

Phylum Pseudomonadota

Class Oligoflexia

Order Bacteriovoracales

Family Halobacteriovoracaceae

Genus Halobacteriovorax

Species Halobacteriovorax marinus

Full scientific name Halobacteriovorax marinus (Baer et al. 2004) Koval et al. 2015

Synonyms (1)

Bacteriovorax marinus

BacDive ID	Other strains from **Halobacteriovorax marinus** (1)	Type strain
1575	H. marinus AQ, DSM 15411, ATCC BAA-683

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	98.944
125439	negative	99.4

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
5801	HALOBACTERIOVORAX MEDIUM (DSMZ Medium 1013)		Medium recipe at MediaDive	Name: HALOBACTERIOVORAX MEDIUM (DSMZ Medium 1013) Composition: MgCl2 x 6 H2O 3.81188 g/l KCl 0.450495 g/l NaBr 0.0693069 g/l MgSO4 x 7 H2O 0.029703 g/l Nitrilotriacetic acid 0.0148515 g/l SrCl2 x 6 H2O 0.010396 g/l NaCl 0.00990099 g/l Citric acid 0.00693069 g/l MnSO4 x H2O 0.00495049 g/l ZnSO4 x 7 H2O 0.00178218 g/l CoSO4 x 7 H2O 0.00178218 g/l CaCl2 x 2 H2O 0.000990099 g/l FeSO4 x 7 H2O 0.000990099 g/l NiCl2 x 6 H2O 0.00029703 g/l AlK(SO4)2 x 12 H2O 0.00019802 g/l CuSO4 x 5 H2O 9.90099e-05 g/l H3BO3 9.90099e-05 g/l Na2MoO4 x 2 H2O 9.90099e-05 g/l KI 3.46535e-05 g/l Na2WO4 x 2 H2O 3.9604e-06 g/l Na2SeO3 x 5 H2O 2.9703e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
5801	positive	growth	25	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
5801	ocean water	Virgin Islands, St. Johns Island	USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence AF084854 (>99% sequence identity) for Halobacteriovorax marinus subclade from Microbeatlas

Aquatic Samples	954
Soil Samples	61
Animal Samples	14
Plant Samples
Total Samples	1029

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5801	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM21091v2 assembly for Halobacteriovorax marinus SJ	complete	GCA_000210915	862908.3	2563366500	862908	95.8

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5801	Bdellovibrio sp. SJ 16S ribosomal RNA gene, partial sequence	AF084854	1464		862908

GC content

@ref	GC-content (mol%)	Method
5801	37.7-38.3
5801	36.5	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Halobacteriovorax marinus SJ
NCBI: GCA_000210915

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.10	no
125439	motility	BacteriaNetⓘ	no	60.30	no
125439	gram_stain	BacteriaNetⓘ	negative	99.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative aerobe	62.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Halobacteriovorax marinus SJ SJ
NCBI: GCA_000210915.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.94	no
125438	anaerobic	anaerobicⓘ	no	87.96	no
125438	aerobic	aerobicⓘ	yes	68.30	no
125438	spore-forming	spore-formingⓘ	no	88.73	no
125438	thermophilic	thermophileⓘ	no	91.60	no
125438	flagellated	motile2+ⓘ	yes	57.13	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Bacteriovorax marinus as Halobacteriovorax marinus gen. nov., comb. nov. and Bacteriovorax litoralis as Halobacteriovorax litoralis comb. nov.; description of Halobacteriovoraceae fam. nov. in the class Deltaproteobacteria.	Koval SF, Williams HN, Stine OC	Int J Syst Evol Microbiol	10.1099/ijs.0.070201-0	2014
Phylogeny	Reclassification of salt-water Bdellovibrio sp. as Bacteriovorax marinus sp. nov. and Bacteriovorax litoralis sp. nov.	Baer ML, Ravel J, Pineiro SA, Guether-Borg D, Williams HN	Int J Syst Evol Microbiol	10.1099/ijs.0.02458-0	2004

References

#5801	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15412
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Halobacteriovorax marinus (DSM 15412, ATCC BAA-682, SJ)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000210915

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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