Strain identifier
version 8.1 (current version)
General
@ref: 63775
BacDive-ID: 157235
keywords: genome sequence, Bacteria, microaerophile, mesophilic, Gram-negative
description: Campylobacter blaseri LMG 30333 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from Faeces,common seal.
NCBI tax id
- NCBI tax id: 2042961
- Matching level: species
doi: 10.13145/bacdive157235.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Campylobacteraceae
- genus: Campylobacter
- species: Campylobacter blaseri
- full scientific name: Campylobacter blaseri Gilbert et al. 2018
@ref: 63775
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Campylobacteraceae
genus: Campylobacter
species: Campylobacter blaseri
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.981
colony morphology
- @ref: 63775
- incubation period: 1 day
Culture and growth conditions
culture temp
- @ref: 63775
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 63775
- oxygen tolerance: microaerophile
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.996
Isolation, sampling and environmental information
isolation
- @ref: 63775
- sample type: Faeces,common seal(Phoca vitulina)
- sampling date: 2017-01-04
- geographic location: Utrecht
- country: Netherlands
- origin.country: NLD
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Campylobacter blaseri LMG 30333 | GCA_013201895 | complete | ncbi | 2042961 |
| 66792 | Campylobacter blaseri strain LMG 30333 | 2042961.4 | complete | patric | 2042961 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 53 | no |
| motile | no | 87.154 | no |
| flagellated | no | 90.046 | no |
| gram-positive | no | 97.674 | no |
| anaerobic | yes | 54.822 | yes |
| aerobic | no | 96.107 | yes |
| halophile | no | 76.284 | no |
| spore-forming | no | 96.593 | no |
| glucose-util | no | 82.219 | no |
| thermophile | no | 96.284 | yes |
| glucose-ferment | no | 82.15 | no |
External links
@ref: 63775
culture collection no.: LMG 30333, CCUG 71276
straininfo link
- @ref: 110334
- straininfo: 408457
literature
- topic: Phylogeny
- Pubmed-ID: 29624164
- title: Campylobacter blaseri sp. nov., isolated from common seals (Phoca vitulina).
- authors: Gilbert MJ, Zomer AL, Timmerman AJ, Spaninks MP, Rubio-Garcia A, Rossen JW, Duim B, Wagenaar JA
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.002742
- year: 2018
- mesh: Animals, Bacterial Typing Techniques, Base Composition, Campylobacter/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Feces/microbiology, Genes, Bacterial, Netherlands, Phenotype, Phoca/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Phenotype
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 63775 | Curators of the CCUG | https://www.ccug.se/strain?id=71276 | Culture Collection University of Gothenburg (CCUG) (CCUG 71276) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 110334 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID408457.1 |