Campylobacter blaseri (LMG 30333, CCUG 71276)

Name: Campylobacter blaseri (LMG 30333, CCUG 71276)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 157235

Type strain

Culture col. no. LMG 30333 CCUG 71276

NCBI tax ID(s) 2042961

Special Collections CCUG

Links

Campylobacter blaseri LMG 30333 is a microaerophile bacterium that was isolated from Faeces,common seal.

microaerophile genome sequence Bacteria

Name and taxonomic classification

SI-ID 408457

LMG 30333,CCUG 71276

@ref 20215

Last LPSN update 2026-02-09 11:38:01

Domain Bacteria

Phylum Pseudomonadota

Class Epsilonproteobacteria

Order Campylobacterales

Family Campylobacteraceae

Genus Campylobacter

Species Campylobacter blaseri

Full scientific name Campylobacter blaseri Gilbert et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	94.983

Colony morphology

63775

Incubation period1 day

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
63775	positive	growth	37

Physiology and metabolism

Oxygen tolerance

63775

Oxygen tolerancemicroaerophile

Spore formation

@ref	Spore formation	Confidence
125438		92.844

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	coenzyme A metabolism	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	ppGpp biosynthesis	100	4 of 4
66794	folate polyglutamylation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	palmitate biosynthesis	95.45	21 of 22
66794	vitamin B1 metabolism	92.31	12 of 13
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	gluconeogenesis	87.5	7 of 8
66794	peptidoglycan biosynthesis	80	12 of 15
66794	photosynthesis	78.57	11 of 14
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	CMP-KDO biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	biotin biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	citric acid cycle	71.43	10 of 14
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	propanol degradation	71.43	5 of 7
66794	glutamate and glutamine metabolism	71.43	20 of 28
66794	threonine metabolism	70	7 of 10
66794	acetoin degradation	66.67	2 of 3
66794	valine metabolism	66.67	6 of 9
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	NAD metabolism	66.67	12 of 18
66794	octane oxidation	66.67	2 of 3
66794	cysteine metabolism	66.67	12 of 18
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	alanine metabolism	62.07	18 of 29
66794	phenylalanine metabolism	61.54	8 of 13
66794	hydrogen production	60	3 of 5
66794	flavin biosynthesis	60	9 of 15
66794	methylglyoxal degradation	60	3 of 5
66794	vitamin K metabolism	60	3 of 5
66794	glycolysis	58.82	10 of 17
66794	purine metabolism	58.51	55 of 94
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	serine metabolism	55.56	5 of 9
66794	pyrimidine metabolism	55.56	25 of 45
66794	d-mannose degradation	55.56	5 of 9
66794	nitrate assimilation	55.56	5 of 9
66794	non-pathway related	55.26	21 of 38
66794	proline metabolism	54.55	6 of 11
66794	methionine metabolism	53.85	14 of 26
66794	ethanol fermentation	50	1 of 2
66794	tryptophan metabolism	50	19 of 38
66794	denitrification	50	1 of 2
66794	sulfopterin metabolism	50	2 of 4
66794	heme metabolism	50	7 of 14
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	suberin monomers biosynthesis	50	1 of 2
66794	adipate degradation	50	1 of 2
66794	tyrosine metabolism	50	7 of 14
66794	isoprenoid biosynthesis	50	13 of 26
66794	butanoate fermentation	50	2 of 4
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	oxidative phosphorylation	49.45	45 of 91
66794	urea cycle	46.15	6 of 13
66794	leucine metabolism	46.15	6 of 13
66794	histidine metabolism	44.83	13 of 29
66794	CO2 fixation in Crenarchaeota	44.44	4 of 9
66794	polyamine pathway	43.48	10 of 23
66794	lipid metabolism	41.94	13 of 31
66794	lysine metabolism	40.48	17 of 42
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	starch degradation	40	4 of 10
66794	ketogluconate metabolism	37.5	3 of 8
66794	vitamin B6 metabolism	36.36	4 of 11
66794	pentose phosphate pathway	36.36	4 of 11
66794	glutathione metabolism	35.71	5 of 14
66794	formaldehyde oxidation	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	sulfate reduction	30.77	4 of 13
66794	glycine metabolism	30	3 of 10
66794	Entner Doudoroff pathway	30	3 of 10
66794	propionate fermentation	30	3 of 10
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	arginine metabolism	25	6 of 24
66794	lactate fermentation	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	phenylpropanoid biosynthesis	23.08	3 of 13
66794	ascorbate metabolism	22.73	5 of 22
66794	degradation of hexoses	22.22	4 of 18
66794	allantoin degradation	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
63775	Faeces,common seal(Phoca vitulina)	2017-01-04	Utrecht	Netherlands	NLD	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1320189v1 assembly for Campylobacter blaseri LMG 30333	complete	GCA_013201895	2042961.4	2996987769	2042961	97.06

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Campylobacter blaseri LMG 30333
NCBI: GCA_013201895

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	86.30	no
125439	motility	BacteriaNetⓘ	yes	58.60	no
125439	gram_stain	BacteriaNetⓘ	negative	87.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	85.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Campylobacter blaseri LMG 30333
NCBI: GCA_013201895.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	94.98	no
125438	anaerobic	anaerobicⓘ	yes	58.29	no
125438	aerobic	aerobicⓘ	no	90.03	no
125438	spore-forming	spore-formingⓘ	no	92.84	no
125438	thermophilic	thermophileⓘ	no	91.35	yes
125438	flagellated	motile2+ⓘ	no	71.68	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Campylobacter blaseri sp. nov., isolated from common seals (Phoca vitulina).	Gilbert MJ, Zomer AL, Timmerman AJ, Spaninks MP, Rubio-Garcia A, Rossen JW, Duim B, Wagenaar JA	Int J Syst Evol Microbiol	10.1099/ijsem.0.002742	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#63775	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 71276
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Campylobacter blaseri (LMG 30333, CCUG 71276)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_013201895

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media