Strain identifier
BacDive ID: 156908
Type strain: 
Species: Porphyromonas pasteri
Strain history: Y. Yamashita; Fac. of Dent. Sci., Kyushu Univ., Japan; KUFDS01.
NCBI tax ID(s): 1583331 (species)
version 8.1 (current version)
General
@ref: 63358
BacDive-ID: 156908
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Porphyromonas pasteri JCM 30531 is an anaerobe, mesophilic bacterium that was isolated from Human saliva.
NCBI tax id
- NCBI tax id: 1583331
- Matching level: species
strain history
- @ref: 67770
- history: Y. Yamashita; Fac. of Dent. Sci., Kyushu Univ., Japan; KUFDS01.
doi: 10.13145/bacdive156908.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Porphyromonadaceae
- genus: Porphyromonas
- species: Porphyromonas pasteri
- full scientific name: Porphyromonas pasteri Sakamoto et al. 2015
@ref: 63358
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Porphyromonadaceae
genus: Porphyromonas
species: Porphyromonas pasteri
type strain: yes
Morphology
colony morphology
- @ref: 63358
- incubation period: 3 days
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 63358 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 63358
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | sampling date | country | origin.country | continent |
|---|---|---|---|---|---|
| 63358 | Human saliva | 2013-08-01 | Japan | JPN | Asia |
| 67770 | Human saliva |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body Product | #Oral cavity and Airways | #Saliva |
Sequence information
16S sequences
- @ref: 67770
- description: Porphyromonas pasteri gene for 16S ribosomal RNA, partial sequence
- accession: LC014934
- length: 1491
- database: ena
- NCBI tax ID: 1583331
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Porphyromonas pasteri JCM 30531 | GCA_014647755 | contig | ncbi | 1583331 |
| 66792 | Porphyromonas pasteri strain JCM 30531 | 1583331.7 | wgs | patric | 1583331 |
GC content
- @ref: 67770
- GC-content: 57.04-58.36
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 93.294 | no |
| gram-positive | no | 97.447 | no |
| anaerobic | yes | 98.682 | yes |
| aerobic | no | 98.797 | no |
| halophile | no | 76.137 | no |
| spore-forming | no | 96.967 | no |
| thermophile | no | 99.384 | yes |
| glucose-util | yes | 82.231 | no |
| flagellated | no | 96.791 | no |
| glucose-ferment | yes | 52.263 | no |
External links
@ref: 63358
culture collection no.: JCM 30531, CCUG 66735
straininfo link
- @ref: 110067
- straininfo: 411820
literature
- topic: Phylogeny
- Pubmed-ID: 25933621
- title: Porphyromonas pasteri sp. nov., isolated from human saliva.
- authors: Sakamoto M, Li D, Shibata Y, Takeshita T, Yamashita Y, Ohkuma M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000294
- year: 2015
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Humans, Molecular Sequence Data, *Phylogeny, Porphyromonas/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Saliva/*microbiology, Sequence Analysis, DNA
- topic2: Pathogenicity
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 63358 | Curators of the CCUG | https://www.ccug.se/strain?id=66735 | Culture Collection University of Gothenburg (CCUG) (CCUG 66735) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 110067 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID411820.1 |