Porphyromonas pasteri (JCM 30531, CCUG 66735)

Name: Porphyromonas pasteri (JCM 30531, CCUG 66735)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 156908

Type strain

Culture col. no. JCM 30531 CCUG 66735

NCBI tax ID(s) 1583331

Special Collections CCUG JCM

History JCM <-- Y. Yamashita; Fac. of Dent. Sci., Kyushu Univ., Japan; KUFDS01.

Links

Porphyromonas pasteri JCM 30531 is an anaerobe bacterium that was isolated from Human saliva.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 411820

JCM 30531,CCUG 66735

@ref 20215

Last LPSN update 2026-05-29 08:43:37

Domain Bacteria

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Porphyromonadaceae

Genus Porphyromonas

Species Porphyromonas pasteri

Full scientific name Porphyromonas pasteri Sakamoto et al. 2015

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	95.52

Colony morphology

63358

Incubation period3 days

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
63358	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

63358

Oxygen toleranceanaerobe

Spore formation

@ref	Spore formation	Confidence
125438		92.433
125439		98.354

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Oral cavity and Airways	#Saliva

Isolation

@ref	Sample type	Host species	Sampling date	Country	Country ISO 3 Code	Continent
63358	Human saliva	Homo sapiens	2013-08-01	Japan	JPN	Asia
67770	Human saliva	Homo sapiens

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1464775v1 assembly for Porphyromonas pasteri JCM 30531	contig	GCA_014647755	1583331.7	8068866920	1583331	74.77

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Porphyromonas pasteri gene for 16S ribosomal RNA, partial sequence	LC014934	1491		1583331
124043	Porphyromonas pasteri strain JCM 30531 16S ribosomal RNA gene, partial sequence.	MT760044	1491		1583331

GC content

@ref	GC-content (mol%)	Method
67770	57.04-58.36	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1464775v1 assembly for Porphyromonas pasteri JCM 30531
BV-BRC: 1583331.7

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	72.33	no
125439	gram_stain	BacteriaNetⓘ	negative	59.64	no
125439	spore_formation	BacteriaNetⓘ	no	98.35	no
125439	motility	BacteriaNetⓘ	no	69.92	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Porphyromonas pasteri strain JCM 30531
PATRIC: 1583331.7

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.52	no
125438	anaerobic	anaerobicⓘ	yes	71.74	yes
125438	spore-forming	spore-formingⓘ	no	92.43	no
125438	aerobic	aerobicⓘ	no	91.54	no
125438	thermophilic	thermophileⓘ	no	94.14	no
125438	flagellated	motile2+ⓘ	no	88.10	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genomic diversity in Porphyromonas: evidence of Porphyromonas catoniae commensality in lungs.	Velo-Suarez L, Moalic Y, Guilloux CA, Ame J, Lamoureux C, Gouriou S, Le Berre R, Beauruelle C, Hery-Arnaud G.	Microb Genom	10.1099/mgen.0.001411	2025
	Identification of a growth factor required for culturing specific fastidious oral bacteria.	Murugkar P, Dimise E, Stewart E, Viala SN, Clardy J, Dewhirst FE, Lewis K.	J Oral Microbiol	10.1080/20002297.2022.2143651	2023
	Laser-assisted microbial culturomics.	Qu T, Koch L, Mukherjee R, Tu Y, Seidel AL, Puttmann LD, Winkel A, Yang I, Grischke J, Liu D, Wolkers WF, Kittler S, Chichkov B, Stiesch M, Szafranski SP.	Nat Commun	10.1038/s41467-025-66804-7	2025
Phylogeny	Porphyromonas pasteri sp. nov., isolated from human saliva.	Sakamoto M, Li D, Shibata Y, Takeshita T, Yamashita Y, Ohkuma M	Int J Syst Evol Microbiol	10.1099/ijs.0.000294	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#63358	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 66735
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Porphyromonas pasteri (JCM 30531, CCUG 66735)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_014647755

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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