Archive BacDiveID:10.13145/bacdive156534.20230509.8.1

Strain identifier

BacDive ID: 156534

Type strain:

Species: Achromobacter anxifer

Strain Designation: Vandamme R-47433, LiPuma AU11412

Strain history: CIP <- 2014, LMG <- 2012, P. Vandamme, Gent Univ., Gent, Belgium: strain Vandamme R-47433 <- 2006, J. Lipuma, Michigan Univ., Michigan, USA strain: LiPuma AU11412

NCBI tax ID(s): 1287737 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 62848

BacDive-ID: 156534

keywords: genome sequence, Bacteria, aerobe, mesophilic, motile

description: Achromobacter anxifer Vandamme R-47433 is an aerobe, mesophilic, motile bacterium that was isolated from human sputum, CF patient.

NCBI tax id

NCBI tax id: 1287737
Matching level: species

strain history

@ref: 116418
history: CIP <- 2014, LMG <- 2012, P. Vandamme, Gent Univ., Gent, Belgium: strain Vandamme R-47433 <- 2006, J. Lipuma, Michigan Univ., Michigan, USA strain: LiPuma AU11412

doi: 10.13145/bacdive156534.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Betaproteobacteria
order: Burkholderiales
family: Alcaligenaceae
genus: Achromobacter
species: Achromobacter anxifer
full scientific name: Achromobacter anxifer Vandamme et al. 2014

@ref: 62848

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Achromobacter

species: Achromobacter anxifer

strain designation: Vandamme R-47433, LiPuma AU11412

type strain: yes

Morphology

cell morphology

@ref	motility	confidence	gram stain	cell shape
69480	yes	97.764
69480		99.993	negative
116418	yes		negative	rod-shaped

colony morphology

@ref: 62848
incubation period: 1 day

Culture and growth conditions

culture medium

@ref: 116418
name: CIP Medium 72
growth: yes
link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@ref: 62848
growth: positive
type: growth
temperature: 37
range: mesophilic

Physiology and metabolism

oxygen tolerance

@ref: 62848
oxygen tolerance: aerobe

spore formation

@ref	spore formation	confidence
69480	no	99.958
69481	no	100

Isolation, sampling and environmental information

isolation

@ref	sample type	country	origin.country	continent	isolation date
62848	human sputum, CF patient	USA	USA	North America
116418	Human, Sputum	United States of America	USA	North America	2006-01-02

isolation source categories

Cat1	Cat2	Cat3
#Host	#Human
#Host Body Product	#Fluids	#Sputum
#Infection	#Disease	#Cystic fibrosis
#Infection	#Patient

Safety information

risk assessment

@ref: 116418
biosafety level: 1
biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Achromobacter anxifer LMG 26857	GCA_903652925	contig	ncbi	1287737
66792	Achromobacter anxifer strain LMG 26857	1287737.4	wgs	patric	1287737

Genome-based predictions

predictions

trait	prediction	confidence	training_data
spore-forming	no	100	no
motile	yes	87.048	no
gram-positive	no	98.306	no
anaerobic	no	98.757	yes
aerobic	yes	87.519	yes
halophile	no	87.296	no
spore-forming	no	94.292	no
thermophile	no	99.668	yes
glucose-util	no	67.21	no
flagellated	no	61.141	no
glucose-ferment	no	91.624	no

External links

@ref: 62848

culture collection no.: CCUG 62444, LMG 26857, CIP 110712

straininfo link

@ref: 109755
straininfo: 376313

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	23891345	Classification of Achromobacter genogroups 2, 5, 7 and 14 as Achromobacter insuavis sp. nov., Achromobacter aegrifaciens sp. nov., Achromobacter anxifer sp. nov. and Achromobacter dolens sp. nov., respectively.	Vandamme P, Moore ER, Cnockaert M, Peeters C, Svensson-Stadler L, Houf K, Spilker T, LiPuma JJ	Syst Appl Microbiol	10.1016/j.syapm.2013.06.005	2013	Achromobacter/chemistry/*classification/genetics/physiology, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, Fatty Acids/analysis, Genotype, Molecular Sequence Data, Multilocus Sequence Typing, Phylogeny	Genetics
Phylogeny	33033853	Achromobacter aestuarii sp. nov., Isolated from an Estuary.	Kim SC, Chung SO, Lee HJ	Curr Microbiol	10.1007/s00284-020-02231-9	2020	Achromobacter, Bacterial Typing Techniques, DNA, Bacterial/genetics, Estuaries, Fatty Acids/analysis, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA	Transcriptome

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
62848	Curators of the CCUG		https://www.ccug.se/strain?id=62444	Culture Collection University of Gothenburg (CCUG) (CCUG 62444)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
69481	Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch	Predictions based on the model GenomeNet Sporulation v. 1	10.21203/rs.3.rs-2527258/v1
109755	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID376313.1
116418	Curators of the CIP		https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110712	Collection of Institut Pasteur (CIP 110712)