Achromobacter anxifer (CCUG 62444, LMG 26857, CIP 110712)

Name: Achromobacter anxifer (CCUG 62444, LMG 26857, CIP 110712)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 156534

Type strain

Strain Designation Vandamme R-47433, LiPuma AU11412

Culture col. no. CCUG 62444 LMG 26857 CIP 110712 Vandamme R-47433 LiPuma AU11412

NCBI tax ID(s) 1287737

Special Collections CCUG CIP

Links

Achromobacter anxifer Vandamme R-47433 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from human sputum, CF patient.

Gram-negative motile rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 376313

LMG 26857,CCUG 62444

@ref 20215

Last LPSN update 2025-12-16 10:07:35

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Achromobacter

Species Achromobacter anxifer

Full scientific name Achromobacter anxifer Vandamme et al. 2014

BacDive ID	Other strains from **Achromobacter anxifer** (2)	Type strain
156535	A. anxifer CCUG 62445, LMG 26858
157257	A. anxifer CCUG 71677

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.1
125438	negative	97.597
116418	negative

Colony morphology

62848

Incubation period1 day

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link
116418	CIP Medium 72		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
62848	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
62848	aerobe
125438	aerobe
125439	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
125439		98.8

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Human
#Host Body Product	#Fluids
#Infection	#Disease
#Infection	#Patient

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
62848	human sputum, CF patient	USA	USA	North America
116418	Human, Sputum	United States of America	USA	North America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
116418	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	LMG 26857 assembly for Achromobacter anxifer LMG 26857	contig	GCA_903652925	1287737.4	8115463678	1287737	69.41

Genome browser: GCA_903652925

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Achromobacter anxifer partial 16S rRNA gene, type strain LMG 26857T	HF586508	1483		1287737

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Achromobacter anxifer LMG 26857
NCBI: GCA_903652925

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.80	no
125439	motility	BacteriaNetⓘ	yes	85.90	no
125439	gram_stain	BacteriaNetⓘ	negative	99.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Achromobacter anxifer strain LMG 26857
PATRIC: 1287737.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.60	no
125438	anaerobic	anaerobicⓘ	no	97.98	yes
125438	spore-forming	spore-formingⓘ	no	89.36	no
125438	aerobic	aerobicⓘ	yes	91.12	yes
125438	thermophilic	thermophileⓘ	no	99.99	no
125438	flagellated	motile2+ⓘ	yes	86.41	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Gene Family Evolution Suggests Correlated Dietary Adaptations in Butterflies and Moths.	Weng YM, Martinez JI, Markee A, Plotkin D, Sondhi Y, Mongue AJ, Frandsen PB, Kawahara AY.	Genome Biol Evol	10.1093/gbe/evaf156	2025
Genetics	Combining Flow Cytometry and Metagenomics Improves Recovery of Metagenome-Assembled Genomes in a Cell Culture from Activated Sludge.	Abdulkadir N, Saraiva JP, Schattenberg F, Toscan RB, Borim Correa F, Harms H, Muller S, da Rocha UN.	Microorganisms	10.3390/microorganisms11010175	2023
Metabolism	Aerobic and oxygen-limited naphthalene-amended enrichments induced the dominance of Pseudomonas spp. from a groundwater bacterial biofilm.	Benedek T, Szentgyorgyi F, Szabo I, Farkas M, Duran R, Kriszt B, Tancsics A.	Appl Microbiol Biotechnol	10.1007/s00253-020-10668-y	2020
	Achromobacter Infections and Treatment Options.	Isler B, Kidd TJ, Stewart AG, Harris P, Paterson DL.	Antimicrob Agents Chemother	10.1128/aac.01025-20	2020
Phylogeny	Achromobacter aestuarii sp. nov., Isolated from an Estuary.	Kim SC, Chung SO, Lee HJ	Curr Microbiol	10.1007/s00284-020-02231-9	2020
Phylogeny	Classification of Achromobacter genogroups 2, 5, 7 and 14 as Achromobacter insuavis sp. nov., Achromobacter aegrifaciens sp. nov., Achromobacter anxifer sp. nov. and Achromobacter dolens sp. nov., respectively.	Vandamme P, Moore ER, Cnockaert M, Peeters C, Svensson-Stadler L, Houf K, Spilker T, LiPuma JJ	Syst Appl Microbiol	10.1016/j.syapm.2013.06.005	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#62848	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 62444
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#116418	Collection of Institut Pasteur ; Curators of the CIP; CIP 110712
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Achromobacter anxifer (CCUG 62444, LMG 26857, CIP 110712)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_903652925

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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