Strain identifier
BacDive ID: 1558
Type strain: 
Species: Bacillus arseniciselenatis
Strain Designation: E1H
Strain history: <- DSM <- ATCC <- JS Blum, E1H
NCBI tax ID(s): 85682 (species)
version 8.1 (current version)
General
@ref: 5855
BacDive-ID: 1558
DSM-Number: 15340
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, rod-shaped
description: Bacillus arseniciselenatis E1H is an anaerobe, spore-forming, mesophilic bacterium that was isolated from anoxic muds.
NCBI tax id
- NCBI tax id: 85682
- Matching level: species
strain history
| @ref | history |
|---|---|
| 5855 | <- ATCC <- J. S. Blum; E1H |
| 67771 | <- DSM <- ATCC <- JS Blum, E1H |
doi: 10.13145/bacdive1558.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus arseniciselenatis
- full scientific name: Bacillus arseniciselenatis corrig. Switzer Blum et al. 2001
synonyms
@ref synonym 20215 Bacillus arsenicoselenatis 20215 Anaerobacillus arseniciselenatis
@ref: 5855
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Anaerobacillus
species: Anaerobacillus arseniciselenatis
full scientific name: Anaerobacillus arseniciselenatis (Switzer Blum et al. 2001) Zavarzina et al. 2010
strain designation: E1H
type strain: yes
Morphology
cell morphology
| @ref | cell shape | motility | gram stain | confidence |
|---|---|---|---|---|
| 67771 | rod-shaped | no | ||
| 67771 | positive | |||
| 69480 | yes | 94.626 | ||
| 69480 | positive | 99.999 |
Culture and growth conditions
culture medium
- @ref: 5855
- name: ANAEROBACILLUS ARSENICISELENATIS MEDIUM (DSMZ Medium 968)
- growth: yes
- link: https://mediadive.dsmz.de/medium/968
- composition: Name: ANAEROBACILLUS ARSENICISELENATIS MEDIUM (DSMZ Medium 968) Composition: NaCl 89.8204 g/l Na2CO3 10.5788 g/l NaHCO3 4.19162 g/l Na-DL-lactate 1.69661 g/l NaNO3 1.2475 g/l L-Cysteine HCl x H2O 0.249501 g/l Na2S x 9 H2O 0.249501 g/l Yeast extract 0.199601 g/l K2HPO4 0.149701 g/l (NH4)2SO4 0.0998004 g/l KH2PO4 0.0798403 g/l MgSO4 0.0249501 g/l HCl 0.00249501 g/l FeCl2 x 4 H2O 0.00149701 g/l Sodium resazurin 0.000499002 g/l NaOH 0.000499002 g/l CoCl2 x 6 H2O 0.000189621 g/l MnCl2 x 4 H2O 9.98004e-05 g/l ZnCl2 6.98603e-05 g/l Na2MoO4 x 2 H2O 3.59281e-05 g/l NiCl2 x 6 H2O 2.39521e-05 g/l H3BO3 5.98802e-06 g/l Na2WO4 x 2 H2O 3.99202e-06 g/l Na2SeO3 x 5 H2O 2.99401e-06 g/l CuCl2 x 2 H2O 1.99601e-06 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 5855 | positive | growth | 30 | mesophilic |
| 67771 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 5855 | anaerobe |
| 67771 | anaerobe |
spore formation
| @ref | type of spore | spore formation | confidence |
|---|---|---|---|
| 67771 | spore | yes | |
| 69481 | yes | 100 | |
| 69480 | yes | 99.447 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 5855 | anoxic muds | California, Mono lake | USA | USA | North America |
| 67771 | From anoxic muds | Mono lake, California | USA | USA | North America |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Mud (Sludge) |
| #Condition | #Anoxic (anaerobic) |
Safety information
risk assessment
- @ref: 5855
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Bacillus arseniciselenatis 16S rRNA gene, type strain DSM 15340T | AJ865469 | 1499 | ena | 85682 |
| 5855 | Bacillus arseniciselenatis 16S ribosomal RNA gene, partial sequence | AF064705 | 1533 | ena | 85682 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Anaerobacillus arseniciselenatis DSM 15340 | GCA_001865995 | contig | ncbi | 85682 |
| 66792 | Anaerobacillus arseniciselenatis strain DSM 15340 | 85682.4 | wgs | patric | 85682 |
| 66792 | Anaerobacillus arseniciselenatis DSM 15340 | 2698536990 | draft | img | 85682 |
GC content
| @ref | GC-content |
|---|---|
| 5855 | 40 |
| 67771 | 40.0 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | yes | 81.113 | no |
| flagellated | no | 75.115 | yes |
| gram-positive | yes | 87.97 | yes |
| anaerobic | yes | 55.228 | yes |
| halophile | yes | 69.371 | no |
| spore-forming | yes | 86.966 | no |
| thermophile | no | 94.058 | yes |
| glucose-util | yes | 85.215 | no |
| aerobic | no | 89.125 | yes |
| glucose-ferment | no | 86.796 | no |
External links
@ref: 5855
culture collection no.: DSM 15340, ATCC 700614, KCTC 5192
straininfo link
- @ref: 71203
- straininfo: 46969
literature
- topic: Enzymology
- Pubmed-ID: 22315613
- title: Isolation, purification, and characterization of xylanase produced by a new species of bacillus in solid state fermentation.
- authors: Kamble RD, Jadhav AR
- journal: Int J Microbiol
- DOI: 10.1155/2012/683193
- year: 2012
- topic2: Phylogeny
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 5855 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15340) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15340 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 71203 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID46969.1 | StrainInfo: A central database for resolving microbial strain identifiers |