Strain identifier
BacDive ID: 15564
Type strain: 
Species: Streptomyces roseolilacinus
Strain history: KCC S-0335 <-- H. Nonomura <-- ISP 5173 <-- INA 14250.
NCBI tax ID(s): 66904 (species)
version 9.1 (current version)
General
@ref: 9366
BacDive-ID: 15564
DSM-Number: 40173
keywords: genome sequence, 16S sequence, Bacteria, spore-forming
description: Streptomyces roseolilacinus DSM 40173 is a spore-forming bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 66904
- Matching level: species
strain history
| @ref | history |
|---|---|
| 9366 | <- KCC <- H. Nonomura, FYU <- E.B. Shirling, ISP <- T.P. Preobrazhenskaya, INA |
| 67770 | KCC S-0335 <-- H. Nonomura <-- ISP 5173 <-- INA 14250. |
doi: 10.13145/bacdive15564.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces roseolilacinus
- full scientific name: Streptomyces roseolilacinus (Preobrazhenskaya and Sveshnikova 1957) Pridham et al. 1958 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Actinomyces roseolilacinus
@ref: 9366
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces roseolilacinus
full scientific name: Streptomyces roseolilacinus (Preobrazhenskaya and Sveshnikova 1957) Pridham et al. 1958
type strain: yes
Culture and growth conditions
culture medium
- @ref: 9366
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 9366 | positive | growth | 28 |
| 67770 | positive | growth | 28 |
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: aerobe
- confidence: 91.178
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | yes | 92.642 |
| 69481 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 9366
- sample type: soil
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 9366
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces roseolilacinus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4335 | D44057 | 121 | nuccore | 66904 |
| 20218 | Streptomyces roseolilacinus gene for 16S rRNA, partial sequence, strain: NBRC 12815 | AB184167 | 1453 | nuccore | 66904 |
| 67770 | Streptomyces roseolilacinus strain AS 4.1865 16S ribosomal RNA gene, partial sequence | AY999879 | 1405 | nuccore | 66904 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces roseolilacinus JCM 4335 | GCA_014649335 | scaffold | ncbi | 66904 |
| 66792 | Streptomyces roseolilacinus strain JCM 4335 | 66904.3 | wgs | patric | 66904 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 89.161 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.814 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 91.178 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 92.642 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 94 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 85.588 | no |
External links
@ref: 9366
culture collection no.: DSM 40173, ATCC 19806, ATCC 19922, CBS 264.66, CBS 558.68, CUB 521, ETH 28444, IFO 12815, INA 14250, ISP 5173, KCC S-0335, NBRC 12815, RIA 1085, JCM 4335, BCRC 12329, CGMCC 4.1776, CGMCC 4.1865, JCM 4606, NRRL B-2699, VKM Ac-1276
straininfo link
| @ref | straininfo |
|---|---|
| 84650 | 37163 |
| 84651 | 285984 |
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Pathogenicity | 19420750 | Physicochemical characters of a tyrosinase inhibitor produced by Streptomyces roseolilacinus NBRC 12815. | Nakashima T, Anzai K, Kuwahara N, Komaki H, Miyadoh S, Harayama S, Tianero MD, Tanaka J, Kanamoto A, Ando K | Biol Pharm Bull | 10.1248/bpb.32.832 | 2009 | Animals, Cell Line, Tumor, Cell Survival/drug effects, Chemical Phenomena, Dose-Response Relationship, Drug, Drug Stability, Enzyme Inhibitors/*chemistry/isolation & purification/pharmacology, Melanins/biosynthesis, Mice, Molecular Conformation, Monophenol Monooxygenase/*antagonists & inhibitors, Streptomyces/*metabolism | Enzymology |
| Phylogeny | 27031169 | Streptomyces indoligenes sp. nov., isolated from rhizosphere soil of Populus euphratica. | Luo X, Sun Y, Xie S, Wan C, Zhang L | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001049 | 2016 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Populus/*microbiology, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 27752797 | Streptomyces luozhongensis sp. nov., a novel actinomycete with antifungal activity and antibacterial activity. | Zhang R, Han X, Xia Z, Luo X, Wan C, Zhang L | Antonie Van Leeuwenhoek | 10.1007/s10482-016-0790-6 | 2016 | Anti-Bacterial Agents/classification/metabolism, Antifungal Agents/classification/metabolism, Bacteria, Base Composition/genetics, DNA, Bacterial/genetics, Fungi/growth & development, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Species Specificity, Streptomyces/*classification/genetics/metabolism/*physiology | Metabolism |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9366 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40173) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40173 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 84650 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID37163.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 84651 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID285984.1 | StrainInfo: A central database for resolving microbial strain identifiers |