Strain identifier

BacDive ID: 15564

Type strain: Yes

Species: Streptomyces roseolilacinus

Strain history: KCC S-0335 <-- H. Nonomura <-- ISP 5173 <-- INA 14250.

NCBI tax ID(s): 66904 (species)

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General

@ref: 9366

BacDive-ID: 15564

DSM-Number: 40173

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Streptomyces roseolilacinus DSM 40173 is a spore-forming, mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 66904
  • Matching level: species

strain history

@refhistory
9366<- KCC <- H. Nonomura, FYU <- E.B. Shirling, ISP <- T.P. Preobrazhenskaya, INA
67770KCC S-0335 <-- H. Nonomura <-- ISP 5173 <-- INA 14250.

doi: 10.13145/bacdive15564.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces roseolilacinus
  • full scientific name: Streptomyces roseolilacinus (Preobrazhenskaya and Sveshnikova 1957) Pridham et al. 1958 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Actinomyces roseolilacinus

@ref: 9366

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces roseolilacinus

full scientific name: Streptomyces roseolilacinus (Preobrazhenskaya and Sveshnikova 1957) Pridham et al. 1958

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no93.905
69480100positive

Culture and growth conditions

culture medium

  • @ref: 9366
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
9366positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

Isolation, sampling and environmental information

isolation

  • @ref: 9366
  • sample type: soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 9366
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces roseolilacinus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4335D44057121ena66904
20218Streptomyces roseolilacinus gene for 16S rRNA, partial sequence, strain: NBRC 12815AB1841671453ena66904
67770Streptomyces roseolilacinus strain AS 4.1865 16S ribosomal RNA gene, partial sequenceAY9998791405ena66904

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces roseolilacinus JCM 4335GCA_014649335scaffoldncbi66904
66792Streptomyces roseolilacinus strain JCM 433566904.3wgspatric66904

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno97.837no
gram-positiveyes89.133no
anaerobicno99.093no
aerobicyes94.829no
halophileno94.719no
spore-formingyes96.106no
glucose-utilyes91.344no
thermophileno97.197no
motileno94.23no
glucose-fermentno89.604no

External links

@ref: 9366

culture collection no.: DSM 40173, ATCC 19806, ATCC 19922, CBS 264.66, CBS 558.68, CUB 521, ETH 28444, IFO 12815, INA 14250, ISP 5173, KCC S-0335, NBRC 12815, RIA 1085, JCM 4335, BCRC 12329, CGMCC 4.1776, CGMCC 4.1865, JCM 4606, NRRL B-2699, VKM Ac-1276

straininfo link

@refstraininfo
8465037163
84651285984

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Pathogenicity19420750Physicochemical characters of a tyrosinase inhibitor produced by Streptomyces roseolilacinus NBRC 12815.Nakashima T, Anzai K, Kuwahara N, Komaki H, Miyadoh S, Harayama S, Tianero MD, Tanaka J, Kanamoto A, Ando KBiol Pharm Bull10.1248/bpb.32.8322009Animals, Cell Line, Tumor, Cell Survival/drug effects, Chemical Phenomena, Dose-Response Relationship, Drug, Drug Stability, Enzyme Inhibitors/*chemistry/isolation & purification/pharmacology, Melanins/biosynthesis, Mice, Molecular Conformation, Monophenol Monooxygenase/*antagonists & inhibitors, Streptomyces/*metabolismEnzymology
Phylogeny27031169Streptomyces indoligenes sp. nov., isolated from rhizosphere soil of Populus euphratica.Luo X, Sun Y, Xie S, Wan C, Zhang LInt J Syst Evol Microbiol10.1099/ijsem.0.0010492016Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Populus/*microbiology, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny27752797Streptomyces luozhongensis sp. nov., a novel actinomycete with antifungal activity and antibacterial activity.Zhang R, Han X, Xia Z, Luo X, Wan C, Zhang LAntonie Van Leeuwenhoek10.1007/s10482-016-0790-62016Anti-Bacterial Agents/classification/metabolism, Antifungal Agents/classification/metabolism, Bacteria, Base Composition/genetics, DNA, Bacterial/genetics, Fungi/growth & development, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Species Specificity, Streptomyces/*classification/genetics/metabolism/*physiologyMetabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9366Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40173)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40173
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84650Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID37163.1StrainInfo: A central database for resolving microbial strain identifiers
84651Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID285984.1StrainInfo: A central database for resolving microbial strain identifiers