Strain identifier

BacDive ID: 15512

Type strain: Yes

Species: Streptomyces regensis

Strain Designation: RRL X-5263

Strain history: KCC S-0820 <-- IFO 13448 <-- SAJ <-- ISP 5551 <-- K. C. Gupta X 5263.

NCBI tax ID(s): 68263 (species)

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General

@ref: 9634

BacDive-ID: 15512

DSM-Number: 40551

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, antibiotic compound production

description: Streptomyces regensis RRL X-5263 is a mesophilic bacterium that produces antibiotic compounds and was isolated from Soil.

NCBI tax id

  • NCBI tax id: 68263
  • Matching level: species

strain history

@refhistory
9634<- E.B. Shirling, ISP <- K.C. Gupta, RRL X-5263
67770KCC S-0820 <-- IFO 13448 <-- SAJ <-- ISP 5551 <-- K. C. Gupta X 5263.

doi: 10.13145/bacdive15512.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces regensis
  • full scientific name: Streptomyces regensis Gupta et al. 1963 (Approved Lists 1980)

@ref: 9634

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces regensis

full scientific name: Streptomyces regensis Gupta et al. 1963

strain designation: RRL X-5263

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9634GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9634ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperaturerange
9634positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

compound production

@refcompound
9634actinomycin
9634actinomycin-complex

metabolite production

  • @ref: 67770
  • Chebi-ID: 15369
  • metabolite: actinomycin
  • production: yes

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Soil
  • geographic location: Katra, Jammu Province
  • country: India
  • origin.country: IND
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_3842.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_224;98_2380;99_3842&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: DQ026649
  • Sequence Identity:
  • Total samples: 185
  • soil counts: 182
  • aquatic counts: 3

Safety information

risk assessment

  • @ref: 9634
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces regensis gene for 16S rRNA, partial sequenceAB122765564ena68263
20218Streptomyces regensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4820D44387120ena68263
20218Streptomyces regensis gene for 16S rRNA, partial sequence, strain: NBRC 13448AB1844101465ena68263
20218Streptomyces regensis strain NRRL B-11479 16S ribosomal RNA gene, partial sequenceDQ0266491540ena68263

Genome sequences

  • @ref: 67770
  • description: Streptomyces regensis NRRL B-11479
  • accession: GCA_001047335
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 68263

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno92.52no
flagellatedno97.493no
gram-positiveyes84.49no
anaerobicno99.004no
aerobicyes91.527no
halophileno84.26no
spore-formingyes93.705no
thermophileno99.395yes
glucose-utilyes88.617no
glucose-fermentno91.511no

External links

@ref: 9634

culture collection no.: DSM 40551, ATCC 27461, CBS 749.72, IFO 13448, ISP 5551, NBRC 13448, RIA 1409, JCM 4820, BCRC 11890, CGMCC 4.1805, NRRL B-11479, VKM Ac-1289

straininfo link

  • @ref: 84598
  • straininfo: 389343

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9634Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40551)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40551
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
84598Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID389343.1StrainInfo: A central database for resolving microbial strain identifiers