Strain identifier

BacDive ID: 1549

Type strain: Yes

Species: Salimicrobium album

Strain Designation: HK 733), HK 733

Strain history: CIP <- 1996, JCM <- M.V. Hao: strain HK 733 <- CCM

NCBI tax ID(s): 50717 (species)

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General

@ref: 9057

BacDive-ID: 1549

DSM-Number: 20748

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, Gram-positive

description: Salimicrobium album HK 733) is an obligate aerobe, Gram-positive bacterium that was isolated from solar saltern.

NCBI tax id

  • NCBI tax id: 50717
  • Matching level: species

strain history

@refhistory
9057<- CCM <- A. Ventosa (M.V. Hao, HK 733)
67770M. V. Hao HK 733 <-- CCM 3517 <-- A. Ventosa 11 (Planococcus sp.).
116195CIP <- 1996, JCM <- M.V. Hao: strain HK 733 <- CCM

doi: 10.13145/bacdive1549.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Salimicrobium
  • species: Salimicrobium album
  • full scientific name: Salimicrobium album (Hao et al. 1985) Yoon et al. 2007

  • synonyms

    • @ref: 20215
    • synonym: Marinococcus albus

@ref: 9057

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Salimicrobium

species: Salimicrobium album

full scientific name: Salimicrobium album (Hao et al. 1985) Yoon et al. 2007

strain designation: HK 733), HK 733

type strain: yes

Morphology

cell morphology

  • @ref: 116195
  • gram stain: positive
  • cell shape: coccus-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9057MARINOCOCCUS ALBUS - MEDIUM (DSMZ Medium 434)yeshttps://mediadive.dsmz.de/medium/434Name: MARINOCOCCUS ALBUS - MEDIUM (DSMZ Medium 434) Composition: NaCl 81.0 g/l Yeast extract 10.0 g/l MgSO4 x 7 H2O 9.6 g/l MgCl2 x 6 H2O 7.0 g/l Proteose peptone no. 3 5.0 g/l KCl 2.0 g/l Glucose 1.0 g/l CaCl2 0.36 g/l NaHCO3 0.06 g/l NaBr 0.026 g/l Distilled water
38527MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
116195CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
116195CIP Medium 9yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=9
116195CIP Medium 167yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=167
116195CIP Medium 234yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=234

culture temp

@refgrowthtypetemperature
9057positivegrowth37
38527positivegrowth30
67770positivegrowth30
116195positivegrowth15-37
116195nogrowth5
116195nogrowth41

Physiology and metabolism

oxygen tolerance

  • @ref: 116195
  • oxygen tolerance: obligate aerobe

halophily

  • @ref: 116195
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-10 %

murein

  • @ref: 9057
  • murein short key: A31
  • type: A1gamma m-Dpm-direct

observation

  • @ref: 67770
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11619516947citrate-carbon source
1161954853esculin-hydrolysis
11619517234glucose-fermentation
11619517716lactose-fermentation
11619517632nitrate+reduction
11619516301nitrite-reduction
116195132112sodium thiosulfate-builds gas from
11619517632nitrate-respiration

antibiotic resistance

  • @ref: 116195
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 116195
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11619515688acetoin-
11619517234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase-3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
116195oxidase+
116195beta-galactosidase+3.2.1.23
116195alcohol dehydrogenase-1.1.1.1
116195gelatinase-
116195amylase-
116195caseinase-3.4.21.50
116195catalase+1.11.1.6
116195tween esterase-
116195gamma-glutamyltransferase+2.3.2.2
116195lecithinase-
116195lipase-
116195lysine decarboxylase-4.1.1.18
116195ornithine decarboxylase-4.1.1.17
116195phenylalanine ammonia-lyase-4.3.1.24
116195protease-
116195tryptophan deaminase-
116195urease+3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116195-+++----------------

Isolation, sampling and environmental information

isolation

@refsample type
9057solar saltern
67770Solar saltern
116195Solar saltern

isolation source categories

  • Cat1: #Condition
  • Cat2: #Saline

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
90571Risk group (German classification)
1161951Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Marinococcus albus 16S rRNA gene, strain DSM 20748X908341489nuccore50717
20218Salimicrobium album gene for 16S rRNA, partial sequence, strain: NBRC 102360AB6817521494nuccore50717

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Salimicrobium album strain DSM 2074850717.3wgspatric50717
66792Salimicrobium album DSM 207482617270835draftimg50717
67770Salimicrobium album DSM 20748GCA_900107115scaffoldncbi50717

GC content

@refGC-contentmethod
905744.9
6777044.9thermal denaturation, midpoint method (Tm)
6777050thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingyes78.18no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no96.769yes
69480spore-formingspore-formingAbility to form endo- or exosporesyes50.655no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes80.772yes
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno88.138yes
69480flagellatedmotile2+Ability to perform flagellated movementyes66.184no

External links

@ref: 9057

culture collection no.: DSM 20748, ATCC 49811, CCM 3517, IAM 12845, JCM 2574, CIP 104820, LMG 17430, NBRC 102360, VKM Ac-1949

straininfo link

  • @ref: 71194
  • straininfo: 14419

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21596507Salimicrobium salexigens sp. nov., a moderately halophilic bacterium from salted hides.de la Haba RR, Yilmaz P, Sanchez-Porro C, Birbir M, Ventosa ASyst Appl Microbiol10.1016/j.syapm.2011.04.0022011Animals, Animals, Domestic/microbiology, Australia, Bacillaceae/*classification/genetics, Base Sequence, DNA, Bacterial, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/chemistry/genetics, Skin/*microbiologyGenetics
Phylogeny25070217Salimicrobium jeotgali sp. nov., isolated from salted, fermented seafood.Choi EJ, Jin HM, Kim KH, Jeon COInt J Syst Evol Microbiol10.1099/ijs.0.062042-02014Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Fermentation, *Food Microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seafood/*microbiology, Sequence Analysis, DNA, Sodium Chloride, Vitamin K 2/analogs & derivatives/chemistryBiotechnology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9057Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20748)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20748
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38527Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16771
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
71194Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID14419.1StrainInfo: A central database for resolving microbial strain identifiers
116195Curators of the CIPCollection of Institut Pasteur (CIP 104820)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104820