Strain identifier

BacDive ID: 1549

Type strain: Yes

Species: Salimicrobium album

Strain Designation: HK 733), HK 733

Strain history: CIP <- 1996, JCM <- M.V. Hao: strain HK 733 <- CCM

NCBI tax ID(s): 50717 (species)

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General

@ref: 9057

BacDive-ID: 1549

DSM-Number: 20748

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-positive, coccus-shaped

description: Salimicrobium album HK 733) is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from solar saltern.

NCBI tax id

  • NCBI tax id: 50717
  • Matching level: species

strain history

@refhistory
9057<- CCM <- A. Ventosa (M.V. Hao, HK 733)
67770M. V. Hao HK 733 <-- CCM 3517 <-- A. Ventosa 11 (Planococcus sp.).
116195CIP <- 1996, JCM <- M.V. Hao: strain HK 733 <- CCM

doi: 10.13145/bacdive1549.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Salimicrobium
  • species: Salimicrobium album
  • full scientific name: Salimicrobium album (Hao et al. 1985) Yoon et al. 2007

  • synonyms

    • @ref: 20215
    • synonym: Marinococcus albus

@ref: 9057

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Salimicrobium

species: Salimicrobium album

full scientific name: Salimicrobium album (Hao et al. 1985) Yoon et al. 2007

strain designation: HK 733), HK 733

type strain: yes

Morphology

cell morphology

  • @ref: 116195
  • gram stain: positive
  • cell shape: coccus-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9057MARINOCOCCUS ALBUS - MEDIUM (DSMZ Medium 434)yeshttps://mediadive.dsmz.de/medium/434Name: MARINOCOCCUS ALBUS - MEDIUM (DSMZ Medium 434) Composition: NaCl 81.0 g/l Yeast extract 10.0 g/l MgSO4 x 7 H2O 9.6 g/l MgCl2 x 6 H2O 7.0 g/l Proteose peptone no. 3 5.0 g/l KCl 2.0 g/l Glucose 1.0 g/l CaCl2 0.36 g/l NaHCO3 0.06 g/l NaBr 0.026 g/l Distilled water
38527MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
116195CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
116195CIP Medium 9yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=9
116195CIP Medium 167yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=167
116195CIP Medium 234yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=234

culture temp

@refgrowthtypetemperaturerange
9057positivegrowth37mesophilic
38527positivegrowth30mesophilic
67770positivegrowth30mesophilic
116195positivegrowth15-37
116195nogrowth5psychrophilic
116195nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 116195
  • oxygen tolerance: obligate aerobe

halophily

  • @ref: 116195
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-10 %

murein

  • @ref: 9057
  • murein short key: A31
  • type: A1gamma m-Dpm-direct

observation

  • @ref: 67770
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11619516947citrate-carbon source
1161954853esculin-hydrolysis
11619517234glucose-fermentation
11619517716lactose-fermentation
11619517632nitrate+reduction
11619516301nitrite-reduction
116195132112sodium thiosulfate-builds gas from
11619517632nitrate-respiration

antibiotic resistance

  • @ref: 116195
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 116195
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11619515688acetoin-
11619517234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase-3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
116195oxidase+
116195beta-galactosidase+3.2.1.23
116195alcohol dehydrogenase-1.1.1.1
116195gelatinase-
116195amylase-
116195caseinase-3.4.21.50
116195catalase+1.11.1.6
116195tween esterase-
116195gamma-glutamyltransferase+2.3.2.2
116195lecithinase-
116195lipase-
116195lysine decarboxylase-4.1.1.18
116195ornithine decarboxylase-4.1.1.17
116195phenylalanine ammonia-lyase-4.3.1.24
116195protease-
116195tryptophan deaminase-
116195urease+3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116195-+++----------------

Isolation, sampling and environmental information

isolation

@refsample type
9057solar saltern
67770Solar saltern
116195Solar saltern

isolation source categories

  • Cat1: #Condition
  • Cat2: #Saline

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
90571Risk group (German classification)
1161951Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Marinococcus albus 16S rRNA gene, strain DSM 20748X908341489ena50717
20218Salimicrobium album gene for 16S rRNA, partial sequence, strain: NBRC 102360AB6817521494ena50717

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Salimicrobium album strain DSM 2074850717.3wgspatric50717
66792Salimicrobium album DSM 207482617270835draftimg50717
67770Salimicrobium album DSM 20748GCA_900107115scaffoldncbi50717

GC content

@refGC-contentmethod
905744.9
6777044.9thermal denaturation, midpoint method (Tm)
6777050thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveyes92.617no
anaerobicno99.057no
halophileyes97.599no
spore-formingno58.85no
glucose-utilyes90.304no
aerobicyes92.184no
thermophileno95.985yes
flagellatedyes56.654no
motileyes77.706no
glucose-fermentno79.205no

External links

@ref: 9057

culture collection no.: DSM 20748, ATCC 49811, CCM 3517, IAM 12845, JCM 2574, CIP 104820, LMG 17430, NBRC 102360, VKM Ac-1949

straininfo link

  • @ref: 71194
  • straininfo: 14419

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21596507Salimicrobium salexigens sp. nov., a moderately halophilic bacterium from salted hides.de la Haba RR, Yilmaz P, Sanchez-Porro C, Birbir M, Ventosa ASyst Appl Microbiol10.1016/j.syapm.2011.04.0022011Animals, Animals, Domestic/microbiology, Australia, Bacillaceae/*classification/genetics, Base Sequence, DNA, Bacterial, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/chemistry/genetics, Skin/*microbiologyGenetics
Phylogeny25070217Salimicrobium jeotgali sp. nov., isolated from salted, fermented seafood.Choi EJ, Jin HM, Kim KH, Jeon COInt J Syst Evol Microbiol10.1099/ijs.0.062042-02014Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Fermentation, *Food Microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seafood/*microbiology, Sequence Analysis, DNA, Sodium Chloride, Vitamin K 2/analogs & derivatives/chemistryBiotechnology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9057Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20748)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20748
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38527Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16771
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
71194Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID14419.1StrainInfo: A central database for resolving microbial strain identifiers
116195Curators of the CIPCollection of Institut Pasteur (CIP 104820)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104820