Strain identifier
BacDive ID: 15480
Type strain: 
Species: Streptomyces prasinopilosus
Strain history: KCC S-0207 <-- J. Nüesch <-- ETH 13765.
NCBI tax ID(s): 67344 (species)
version 8.1 (current version)
General
@ref: 9310
BacDive-ID: 15480
DSM-Number: 40098
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Streptomyces prasinopilosus DSM 40098 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 67344
- Matching level: species
strain history
| @ref | history |
|---|---|
| 9310 | <- E.B. Shirling, ISP <- R. Hütter, ETH, 13675 |
| 67770 | KCC S-0207 <-- J. Nüesch <-- ETH 13765. |
doi: 10.13145/bacdive15480.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces prasinopilosus
- full scientific name: Streptomyces prasinopilosus Ettlinger et al. 1958 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Streptomyces emeiensis
@ref: 9310
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces prasinopilosus
full scientific name: Streptomyces prasinopilosus Ettlinger et al. 1958 emend. Labeda et al. 2016
type strain: yes
Morphology
multimedia
- @ref: 9310
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40098.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 9310 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 9310 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 9310 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 9310 | soil | Mallorca | Spain | ESP | Europe |
| 67770 | Soil | Port Cristo, Mallorca | Spain | ESP | Europe |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_3632.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_1938;98_2384;99_3632&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: EF626597
- Sequence Identity:
- Total samples: 145
- soil counts: 94
- aquatic counts: 3
- animal counts: 8
- plant counts: 40
Safety information
risk assessment
- @ref: 9310
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces prasinopilosus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4404 | D44119 | 119 | ena | 67344 |
| 20218 | Streptomyces prasinopilosus strain NRRL B-2711 16S ribosomal RNA gene, partial sequence | EF626597 | 1516 | ena | 67344 |
| 9310 | Streptomyces prasinopilosus gene for 16S rRNA, partial sequence, strain: NBRC 12809 | AB249968 | 1416 | ena | 67344 |
Genome sequences
- @ref: 67770
- description: Streptomyces prasinopilosus NRRL B-2711
- accession: GCA_001419695
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 67344
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 97.725 | no |
| gram-positive | yes | 91.357 | no |
| anaerobic | no | 99.413 | no |
| aerobic | yes | 92.716 | no |
| halophile | no | 84.571 | no |
| spore-forming | yes | 92.452 | no |
| thermophile | no | 93.852 | yes |
| glucose-util | yes | 89.11 | no |
| motile | no | 92.611 | no |
| glucose-ferment | no | 88.176 | no |
External links
@ref: 9310
culture collection no.: DSM 40098, ATCC 19799, CBS 551.68, IFO 12809, ISP 5098, JCM 4207, JCM 4404, NBRC 12809, NRRL B-2711, RIA 1078, ETH 13675, BCRC 13678, CGMCC 4.1311, CGMCC 4.1525, ICMP 134, LMG 19345, NCIMB 9842, VKM Ac-1740
straininfo link
- @ref: 84567
- straininfo: 13353
literature
- topic: Phylogeny
- Pubmed-ID: 17625208
- title: Streptomyces emeiensis sp. nov., a novel streptomycete from soil in China.
- authors: Sun W, Huang Y, Zhang YQ, Liu ZH
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.64934-0
- year: 2007
- mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, *Soil Microbiology, Streptomyces/chemistry/*classification/genetics/*isolation & purification
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9310 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40098) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40098 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 84567 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID13353.1 | StrainInfo: A central database for resolving microbial strain identifiers |