Strain identifier

BacDive ID: 15477

Type strain: Yes

Species: Streptomyces polychromogenes

Strain Designation: T 4473

Strain history: KCC S-0505 <-- IFO 13072 <-- SAJ <-- ISP 5316 <-- G. Hagemann T-4473.

NCBI tax ID(s): 67342 (species)

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General

@ref: 9454

BacDive-ID: 15477

DSM-Number: 40316

keywords: 16S sequence, Bacteria

description: Streptomyces polychromogenes T 4473 is a bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 67342
  • Matching level: species

strain history

@refhistory
9454<- E.B. Shirling, ISP <- G. Hageman, T 4473
67770KCC S-0505 <-- IFO 13072 <-- SAJ <-- ISP 5316 <-- G. Hagemann T-4473.

doi: 10.13145/bacdive15477.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces polychromogenes
  • full scientific name: Streptomyces polychromogenes Hagemann et al. 1964 (Approved Lists 1980)

@ref: 9454

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces polychromogenes

full scientific name: Streptomyces polychromogenes Hagemann et al. 1964

strain designation: T 4473

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9454GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9454ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperature
9454positivegrowth28
67770positivegrowth28

Physiology and metabolism

compound production

@refcompound
9454antibiotic T 4473
9454o-carbamyl-D serine

metabolite production

  • @ref: 67770
  • metabolite: O-carbamyl-D-serine
  • production: yes

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
9454soilVenezuelaVENMiddle and South America
67770SoilVenezuelaVENMiddle and South America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_1810.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_144;99_1810&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AY999923
  • Sequence Identity:
  • Total samples: 6072
  • soil counts: 4236
  • aquatic counts: 230
  • animal counts: 299
  • plant counts: 1307

Safety information

risk assessment

  • @ref: 9454
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces polychromogenes gene for 16S ribosomal RNA, partial sequence, strain: JCM 4505D44195120nuccore67342
20218Streptomyces polychromogenes gene for 16S rRNA, partial sequence, strain: NBRC 13072AB1842921470nuccore67342
20218Streptomyces polychromogenes strain NRRL B-3032 16S ribosomal RNA gene, partial sequenceAY9999231326nuccore67342

GC content

  • @ref: 67770
  • GC-content: 74.1
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 9454

culture collection no.: DSM 40316, ATCC 12595, ATCC 25484, CBS 311.56, CBS 912.69, ETH 23877, ETH 31545, IFO 13072, ISP 5316, KCC S-0236, NBRC 13072, NRRL B-12233, RIA 1264, RIA 362, JCM 4505, BCRC 11899, JCM 4236, KCTC 9765, NCIMB 8791, NRRL B-2656, NRRL B-3032, NRRL B-5697, VKM Ac-1207

straininfo link

  • @ref: 84564
  • straininfo: 177137

literature

  • topic: Phylogeny
  • Pubmed-ID: 26703868
  • title: Streptomyces yangpuensis sp. nov., isolated from soil.
  • authors: Tang B, Yu Y, Zhi X, Yang L, Cen X, Zhao G, Ding X
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000861
  • year: 2015

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9454Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40316)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40316
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
84564Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID177137.1StrainInfo: A central database for resolving microbial strain identifiers