Strain identifier

BacDive ID: 15414

Type strain: Yes

Species: Streptomyces misionensis

Strain Designation: INTA 3944

Strain history: KCC S-0497 <-- IFO 13063 <-- SAJ <-- ISP 5306 <-- I. L. Calot and A. P. Cercós 3944.

NCBI tax ID(s): 1306177 (strain), 67331 (species)

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General

@ref: 9447

BacDive-ID: 15414

DSM-Number: 40306

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive

description: Streptomyces misionensis INTA 3944 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil.

NCBI tax id

NCBI tax idMatching level
67331species
1306177strain

strain history

@refhistory
9447<- E.B. Shirling, ISP <- I.L. Calot and A.P. Cercos, INTA, 3944
67770KCC S-0497 <-- IFO 13063 <-- SAJ <-- ISP 5306 <-- I. L. Calot and A. P. Cercós 3944.

doi: 10.13145/bacdive15414.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces misionensis
  • full scientific name: Streptomyces misionensis Cercos et al. 1962 (Approved Lists 1980)

@ref: 9447

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces misionensis

full scientific name: Streptomyces misionensis Cercos et al. 1962 emend. Nouioui et al. 2018

strain designation: INTA 3944

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

Culture and growth conditions

culture medium

  • @ref: 9447
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
9447positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

  • @ref: 69481
  • spore formation: yes
  • confidence: 100

compound production

@refcompound
9447misionin
67770Misionin

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
9447soil
67770SoilMisionesArgentinaARGMiddle and South America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 9447
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces misionensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4497D44189120ena1306177
9447Streptomyces misionensis strain NRRL B-3230 16S ribosomal RNA gene, partial sequenceEF1786781485ena1306177
9447Streptomyces misionensis gene for 16S rRNA, partial sequence, strain: NBRC 13063AB1842851474ena1306177
9447Streptomyces misionensis JCM 4497 16S ribosomal RNA, partial sequenceNR_0441381485nuccore1306177

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces misionensis JCM 4497GCA_001315385contigncbi1306177
66792Streptomyces misionensis JCM 44971306177.6wgspatric1306177
66792Streptomyces misionensis strain DSM 4030667331.3wgspatric67331
66792Streptomyces misionensis DSM 403062634166373draftimg67331
66792Streptomyces misionensis JCM 44972734481985draftimg1306177
67770Streptomyces misionensis DSM 40306GCA_900104815contigncbi67331

GC content

  • @ref: 67770
  • GC-content: 72.4
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno92.45no
gram-positiveyes89.378no
anaerobicno98.423no
halophileno90.56no
spore-formingyes71.386no
thermophileno95.084yes
glucose-utilyes86.838no
aerobicyes94.401no
flagellatedno97.573no
glucose-fermentno91.919no

External links

@ref: 9447

culture collection no.: DSM 40306, ATCC 14991, ATCC 25475, CBS 885.69, IFO 13063, ISP 5306, JCM 4497, KCC S-0497, NBRC 13063, NRRL B-3230, RIA 1255, VKM Ac-626, BCRC 12094, CGMCC 4.1982, NCIMB 12979

straininfo link

  • @ref: 84503
  • straininfo: 92371

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny25160509Acidophilic actinomycetes from rhizosphere soil: diversity and properties beneficial to plants.Poomthongdee N, Duangmal K, Pathom-aree WJ Antibiot (Tokyo)10.1038/ja.2014.1172014Actinobacteria/classification/isolation & purification/*metabolism, Antifungal Agents/isolation & purification/*pharmacology, Fusarium/growth & development, Helminthosporium/growth & development, Hydrogen-Ion Concentration, Phosphates/metabolism, RNA, Ribosomal, 16S/genetics, Rhizoctonia/growth & development, Rhizosphere, Siderophores/*biosynthesis, *Soil Microbiology, Streptomyces/classification/isolation & purification/*metabolismEnzymology
25479625Antioxidant activity and free radical scavenging activities of Streptomyces sp. strain MJM 10778.Lee DR, Lee SK, Choi BK, Cheng J, Lee YS, Yang SH, Suh JWAsian Pac J Trop Med10.1016/S1995-7645(14)60170-X2014
Phylogeny27072394Streptomyces malaysiense sp. nov.: A novel Malaysian mangrove soil actinobacterium with antioxidative activity and cytotoxic potential against human cancer cell lines.Ser HL, Palanisamy UD, Yin WF, Chan KG, Goh BH, Lee LHSci Rep10.1038/srep242472016Antineoplastic Agents/*toxicity, Antioxidants/*pharmacology, Glutathione/metabolism, HCT116 Cells, HT29 Cells, Humans, Phylogeny, *Soil Microbiology, Streptomyces/chemistry/classification/*genetics/isolation & purification, Tumor Suppressor Protein p53/genetics/metabolism, WetlandsMetabolism
Phylogeny28559892Streptomyces colonosanans sp. nov., A Novel Actinobacterium Isolated from Malaysia Mangrove Soil Exhibiting Antioxidative Activity and Cytotoxic Potential against Human Colon Cancer Cell Lines.Law JW, Ser HL, Duangjai A, Saokaew S, Bukhari SI, Khan TM, Ab Mutalib NS, Chan KG, Goh BH, Lee LHFront Microbiol10.3389/fmicb.2017.008772017
Phylogeny30168790Streptomyces venetus sp. nov., an actinomycete with a blue aerial mycelium.Sujarit K, Kudo T, Ohkuma M, Pathom-Aree W, Lumyong SInt J Syst Evol Microbiol10.1099/ijsem.0.0029952018Arecaceae/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Genes, Bacterial, Glycolipids/chemistry, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Thailand, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny30303477Streptomyces lichenis sp. nov., isolated from lichen.Saeng-In P, Phongsopitanun W, Savarajara A, Tanasupawat SInt J Syst Evol Microbiol10.1099/ijsem.0.0030522018Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lichens/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Thailand, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny33415367Streptomyces cupreus sp. nov., an antimicrobial producing actinobacterium isolated from Himalayan soil.Maiti PK, Mandal SArch Microbiol10.1007/s00203-020-02160-y2021DNA, Bacterial/genetics, India, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Species Specificity, *Streptomyces/classification/genetics
34589300Apis andreniformis associated Actinomycetes show antimicrobial activity against black rot pathogen (Xanthomonas campestris pv. campestris).Promnuan Y, Promsai S, Pathom-Aree W, Meelai SPeerJ10.7717/peerj.120972021

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9447Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40306)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40306
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84503Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92371.1StrainInfo: A central database for resolving microbial strain identifiers