Strain identifier
BacDive ID: 15414
Type strain: 
Species: Streptomyces misionensis
Strain Designation: INTA 3944
Strain history: KCC S-0497 <-- IFO 13063 <-- SAJ <-- ISP 5306 <-- I. L. Calot and A. P. Cercós 3944.
NCBI tax ID(s): 1306177 (strain), 67331 (species)
version 9.3 (current version)
General
@ref: 9447
BacDive-ID: 15414
DSM-Number: 40306
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic
description: Streptomyces misionensis INTA 3944 is a spore-forming, mesophilic bacterium that was isolated from soil.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 67331 | species |
| 1306177 | strain |
strain history
| @ref | history |
|---|---|
| 9447 | <- E.B. Shirling, ISP <- I.L. Calot and A.P. Cercos, INTA, 3944 |
| 67770 | KCC S-0497 <-- IFO 13063 <-- SAJ <-- ISP 5306 <-- I. L. Calot and A. P. Cercós 3944. |
doi: 10.13145/bacdive15414.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces misionensis
- full scientific name: Streptomyces misionensis Cercos et al. 1962 (Approved Lists 1980)
@ref: 9447
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces misionensis
full scientific name: Streptomyces misionensis Cercos et al. 1962 emend. Nouioui et al. 2018
strain designation: INTA 3944
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 125439 | positive | 99.9 | |
| 125439 | 91.3 | no |
Culture and growth conditions
culture medium
- @ref: 9447
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 9447 | positive | growth | 28 |
| 67770 | positive | growth | 28 |
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 98.3
compound production
| @ref | compound |
|---|---|
| 9447 | misionin |
| 67770 | Misionin |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 9447 | soil | ||||
| 67770 | Soil | Misiones | Argentina | ARG | Middle and South America |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 9447
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces misionensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4497 | D44189 | 120 | nuccore | 1306177 |
| 9447 | Streptomyces misionensis strain NRRL B-3230 16S ribosomal RNA gene, partial sequence | EF178678 | 1485 | nuccore | 1306177 |
| 9447 | Streptomyces misionensis gene for 16S rRNA, partial sequence, strain: NBRC 13063 | AB184285 | 1474 | nuccore | 1306177 |
| 9447 | Streptomyces misionensis JCM 4497 16S ribosomal RNA, partial sequence | NR_044138 | 1485 | nuccore | 1306177 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces misionensis JCM 4497 | GCA_001315385 | contig | ncbi | 1306177 |
| 66792 | Streptomyces misionensis JCM 4497 | 1306177.6 | wgs | patric | 1306177 |
| 66792 | Streptomyces misionensis strain DSM 40306 | 67331.3 | wgs | patric | 67331 |
| 66792 | Streptomyces misionensis DSM 40306 | 2634166373 | draft | img | 67331 |
| 66792 | Streptomyces misionensis JCM 4497 | 2734481985 | draft | img | 1306177 |
| 67770 | Streptomyces misionensis DSM 40306 | GCA_900104815 | contig | ncbi | 67331 |
GC content
- @ref: 67770
- GC-content: 72.4
- method: genome sequence analysis
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 81.226 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 91.919 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 75.021 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 83.957 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 94.09 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 88.5 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 88.2 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 91.3 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 99.9 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 98.3 |
External links
@ref: 9447
culture collection no.: DSM 40306, ATCC 14991, ATCC 25475, CBS 885.69, IFO 13063, ISP 5306, JCM 4497, KCC S-0497, NBRC 13063, NRRL B-3230, RIA 1255, VKM Ac-626, BCRC 12094, CGMCC 4.1982, NCIMB 12979
straininfo link
- @ref: 84503
- straininfo: 92371
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25160509 | Acidophilic actinomycetes from rhizosphere soil: diversity and properties beneficial to plants. | Poomthongdee N, Duangmal K, Pathom-aree W | J Antibiot (Tokyo) | 10.1038/ja.2014.117 | 2014 | Actinobacteria/classification/isolation & purification/*metabolism, Antifungal Agents/isolation & purification/*pharmacology, Fusarium/growth & development, Helminthosporium/growth & development, Hydrogen-Ion Concentration, Phosphates/metabolism, RNA, Ribosomal, 16S/genetics, Rhizoctonia/growth & development, Rhizosphere, Siderophores/*biosynthesis, *Soil Microbiology, Streptomyces/classification/isolation & purification/*metabolism | Enzymology |
| 25479625 | Antioxidant activity and free radical scavenging activities of Streptomyces sp. strain MJM 10778. | Lee DR, Lee SK, Choi BK, Cheng J, Lee YS, Yang SH, Suh JW | Asian Pac J Trop Med | 10.1016/S1995-7645(14)60170-X | 2014 | |||
| Phylogeny | 27072394 | Streptomyces malaysiense sp. nov.: A novel Malaysian mangrove soil actinobacterium with antioxidative activity and cytotoxic potential against human cancer cell lines. | Ser HL, Palanisamy UD, Yin WF, Chan KG, Goh BH, Lee LH | Sci Rep | 10.1038/srep24247 | 2016 | Antineoplastic Agents/*toxicity, Antioxidants/*pharmacology, Glutathione/metabolism, HCT116 Cells, HT29 Cells, Humans, Phylogeny, *Soil Microbiology, Streptomyces/chemistry/classification/*genetics/isolation & purification, Tumor Suppressor Protein p53/genetics/metabolism, Wetlands | Metabolism |
| Phylogeny | 28559892 | Streptomyces colonosanans sp. nov., A Novel Actinobacterium Isolated from Malaysia Mangrove Soil Exhibiting Antioxidative Activity and Cytotoxic Potential against Human Colon Cancer Cell Lines. | Law JW, Ser HL, Duangjai A, Saokaew S, Bukhari SI, Khan TM, Ab Mutalib NS, Chan KG, Goh BH, Lee LH | Front Microbiol | 10.3389/fmicb.2017.00877 | 2017 | ||
| Phylogeny | 30168790 | Streptomyces venetus sp. nov., an actinomycete with a blue aerial mycelium. | Sujarit K, Kudo T, Ohkuma M, Pathom-Aree W, Lumyong S | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002995 | 2018 | Arecaceae/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Genes, Bacterial, Glycolipids/chemistry, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Thailand, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 30303477 | Streptomyces lichenis sp. nov., isolated from lichen. | Saeng-In P, Phongsopitanun W, Savarajara A, Tanasupawat S | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003052 | 2018 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lichens/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Thailand, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 33415367 | Streptomyces cupreus sp. nov., an antimicrobial producing actinobacterium isolated from Himalayan soil. | Maiti PK, Mandal S | Arch Microbiol | 10.1007/s00203-020-02160-y | 2021 | DNA, Bacterial/genetics, India, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Species Specificity, *Streptomyces/classification/genetics | |
| 34589300 | Apis andreniformis associated Actinomycetes show antimicrobial activity against black rot pathogen (Xanthomonas campestris pv. campestris). | Promnuan Y, Promsai S, Pathom-Aree W, Meelai S | PeerJ | 10.7717/peerj.12097 | 2021 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9447 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40306) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40306 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 84503 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID92371.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |