Strain identifier
version 8.1 (current version)
General
@ref: 59317
BacDive-ID: 153966
keywords: genome sequence, Bacteria, microaerophile, mesophilic
description: Aggregatibacter segnis CCUG 51794 is a microaerophile, mesophilic bacterium that was isolated from Human sputum,chronic bronchitis.
NCBI tax id
- NCBI tax id: 739
- Matching level: species
doi: 10.13145/bacdive153966.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pasteurellales
- family: Pasteurellaceae
- genus: Aggregatibacter
- species: Aggregatibacter segnis
- full scientific name: Aggregatibacter segnis (Kilian 1977) Nørskov-Lauritsen and Kilian 2006
synonyms
- @ref: 20215
- synonym: Haemophilus segnis
@ref: 59317
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pasteurellales
family: Pasteurellaceae
genus: Aggregatibacter
species: Aggregatibacter segnis
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 91.947 | |
| 69480 | 99.919 | negative |
Culture and growth conditions
culture temp
- @ref: 59317
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 59317
- oxygen tolerance: microaerophile
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.983 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 59317
- sample type: Human sputum,chronic bronchitis
- sampling date: 1973
- country: Denmark
- origin.country: DNK
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body Product | #Fluids | #Sputum |
| #Infection | #Patient |
Sequence information
Genome sequences
- @ref: 66792
- description: Aggregatibacter segnis strain HK_296
- accession: 739.7
- assembly level: wgs
- database: patric
- NCBI tax ID: 739
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 90.184 | no |
| flagellated | no | 96.16 | no |
| gram-positive | no | 98.326 | no |
| anaerobic | no | 96.136 | yes |
| aerobic | no | 94.815 | yes |
| halophile | yes | 59.046 | no |
| spore-forming | no | 98.873 | no |
| thermophile | no | 97.507 | no |
| glucose-util | no | 57.149 | no |
| glucose-ferment | yes | 52.217 | no |
External links
@ref: 59317
culture collection no.: CCUG 51794
straininfo link
- @ref: 107691
- straininfo: 303126
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 59317 | Curators of the CCUG | https://www.ccug.se/strain?id=51794 | Culture Collection University of Gothenburg (CCUG) (CCUG 51794) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 107691 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID303126.1 |