Strain identifier

BacDive ID: 15373

Type strain: Yes

Species: Streptomyces libani

Strain Designation: 2343 FI = IPV

Strain history: KCC S-0322 <-- IPV 1945 <-- E. Baldacci 2343 FI.

NCBI tax ID(s): 68043 (species)

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General

@ref: 9638

BacDive-ID: 15373

DSM-Number: 40555

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, antibiotic compound production

description: Streptomyces libani 2343 FI = IPV is a spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

NCBI tax id

  • NCBI tax id: 68043
  • Matching level: species

strain history

@refhistory
9638<- E.B. Shirling, ISP <- E. Baldacci, 2343 FI (= IPV 1945)
67770KCC S-0322 <-- IPV 1945 <-- E. Baldacci 2343 FI.

doi: 10.13145/bacdive15373.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces libani
  • full scientific name: Streptomyces libani Baldacci and Grein 1966 (Approved Lists 1980)

@ref: 9638

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces libani subsp. libani

full scientific name: Streptomyces libani subsp. libani Baldacci and Grein 1966

strain designation: 2343 FI = IPV

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no95.803
69480100positive

multimedia

  • @ref: 9638
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40555.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 9638
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
9638positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

@refcompound
9638libanomycin
67770Libanomycin

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
9638soilBiblosLebanonLBNAsia
67770SoilLebanonLBNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 9638
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces libani subsp. libani strain DSM 40555 16S ribosomal RNA gene, partial sequenceHQ2444641375ena68044
20218Streptomyces libani subsp. libani gene for 16S rRNA, partial sequenceAB122726565ena68044
20218Streptomyces libani subsp. libani gene for 16S ribosomal RNA, partial sequence, strain: JCM 4781D44357121ena68044
20218Streptomyces libani subsp. libani gene for 16S rRNA, partial sequence, strain: NBRC 13452AB1844141453ena68044
20218Streptomyces libani subsp. libani strain NRRL B-3446T 16S ribosomal RNA gene, partial sequenceDQ4425181499ena68044

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces libani subsp. libani JCM 4322GCA_014649275scaffoldncbi68044
66792Streptomyces libani subsp. libani strain JCM 432268044.4wgspatric68044
66792Streptomyces libani subsp. libani strain NBRC 1345268044.3wgspatric68044
67770Streptomyces libani subsp. libani NBRC 13452GCA_009811595contigncbi68044
66792Streptomyces libani subsp. libani DSM 40555GCA_027497475completencbi68044

GC content

  • @ref: 67770
  • GC-content: 71
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno98.098no
gram-positiveyes89.772no
anaerobicno99.125no
aerobicyes91.951no
halophileno88.608no
spore-formingyes95.959no
glucose-fermentno91.655no
thermophileno97.368yes
glucose-utilyes91.26no
motileno92.844no

External links

@ref: 9638

culture collection no.: DSM 40555, ATCC 23732, CBS 753.72, DSM 41227, IFO 13452, ISP 5555, JCM 4322, JCM 4781, KCC S-0322, KCC S-0781, NBRC 13452, NRRL B-3446, RIA 1413, IPV 1945, BCRC 15196, KCTC 9113, NCAIM B.01474, NCIMB 11012, VKM Ac-1905

straininfo link

  • @ref: 84463
  • straininfo: 265434

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9638Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40555)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40555
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84463Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID265434.1StrainInfo: A central database for resolving microbial strain identifiers