Streptomyces libani subsp. libani (DSM 40555, ATCC 23732, CBS 753.72)

Name: Streptomyces libani subsp. libani (DSM 40555, ATCC 23732, CBS 753.72)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15373

Type strain

Strain Designation 2343 FI = IPV

Culture col. no. DSM 40555 ATCC 23732 CBS 753.72 DSM 41227 IFO 13452 15 more

NCBI tax ID(s) 1920

Special Collections DSMZ JCM KCTC

History <- E.B. Shirling, ISP <- E. Baldacci, 2343 FI (= IPV 1945) KCC S-0322 <-- IPV 1945 <-- E. Baldacci 2343 FI.

Links

Streptomyces libani subsp. libani 2343 FI = IPV is a mesophilic prokaryote that produces antibiotic compounds and was isolated from soil.

antibiotic compound production mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 265434

ATCC 23732,IFO 13452,DSM 40555,DSM 41227,JCM 4322,JCM 4781,NRRL B-3446,NCIMB 11012,VKM Ac-1905,CBS 753.72,KCTC 9113,NBRC 13452,NCAIM B.01474,BCRC 15196,CCRC 15196,NCIB 11012

@ref 20215

Last LPSN update 2026-02-09 11:21:40

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces libani subsp. libani

Full scientific name Streptomyces libani subsp. libani Baldacci and Grein 1966 (Approved Lists 1980)

BacDive ID	Other strains from **Streptomyces libani subsp. libani** (2)	Type strain
15374	S. libani subsp. libani DSM 41228, ATCC 23734, IMRU 3916, IPV 1943, ...
15375	S. libani subsp. libani DSM 41229, ATCC 23733, IMRU 3917, IPV 1944, ...

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.9
125439		92.9
125438	positive	91.462

Multimedia

@ref:	9638
multimedia content:	DSM_40555.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_40555.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
9638	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
9638	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	91.883
125439	obligate aerobe	97.8

Spore formation

@ref	Spore formation	Confidence
125439		95.2
125438		92.14

Compound production

@ref	Compound
9638	libanomycin
67770	Libanomycin

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
9638	soil	Biblos	Lebanon	LBN	Asia
67770	Soil		Lebanon	LBN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9638	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2749747v1 assembly for Streptomyces nigrescens DSM 40555	complete	GCA_027497475	68044.5	8118134103	68044	98.72
67770	ASM981159v1 assembly for Streptomyces nigrescens NBRC 13452	contig	GCA_009811595	68044.3	8112123406	68044	77.82
66792	ASM1464927v1 assembly for Streptomyces nigrescens JCM 4322	scaffold	GCA_014649275	68044.4	8112181140	68044	69.39

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces libani subsp. libani strain DSM 40555 16S ribosomal RNA gene, partial sequence	HQ244464	1375	68044
20218	Streptomyces libani subsp. libani gene for 16S rRNA, partial sequence	AB122726	565	68044
20218	Streptomyces libani subsp. libani gene for 16S ribosomal RNA, partial sequence, strain: JCM 4781	D44357	121	68044
20218	Streptomyces libani subsp. libani gene for 16S rRNA, partial sequence, strain: NBRC 13452	AB184414	1453	68044
20218	Streptomyces libani subsp. libani strain NRRL B-3446T 16S ribosomal RNA gene, partial sequence	DQ442518	1499	68044
124043	Streptomyces libani subsp. libani strain JCM 4322 16S ribosomal RNA gene, partial sequence.	MT760509	1341	1920

GC content

@ref	GC-content (mol%)	Method
67770	71	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces libani subsp. libani JCM 4322
NCBI: GCA_014649275

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	95.20	no
125439	motility	BacteriaNetⓘ	no	92.90	no
125439	gram_stain	BacteriaNetⓘ	positive	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces libani subsp. libani DSM 40555
NCBI: GCA_027497475.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.46	no
125438	anaerobic	anaerobicⓘ	no	96.51	no
125438	aerobic	aerobicⓘ	yes	91.88	no
125438	spore-forming	spore-formingⓘ	yes	92.14	no
125438	thermophilic	thermophileⓘ	no	94.50	yes
125438	flagellated	motile2+ⓘ	no	88.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Antifungal activity and mechanism of action of dichloromethane extract fraction A from Streptomyces libani against Aspergillus fumigatus.	Azish M, Shams-Ghahfarokhi M, Razzaghi-Abyaneh M.	J Appl Microbiol	10.1111/jam.15040	2021
Phylogeny	Reclassification of Streptomyces hygroscopicus subsp. glebosus and Streptomyces libani subsp. rufus as later heterotypic synonyms of Streptomyces platensis.	Komaki H, Tamura T.	Int J Syst Evol Microbiol	10.1099/ijsem.0.004279	2020
	Optimization of the antifungal metabolite production in Streptomyces libani isolated from northern forests soils in Iran.	Azish M, Shams Ghahfarokhi M, Razzaghi Abyaneh M.	Curr Med Mycol	10.18502/cmm.6.4.5333	2020
	Accessing the specialized metabolome of actinobacteria from the bulk soil of Paullinia cupana Mart. on the Brazilian Amazon: a promising source of bioactive compounds against soybean phytopathogens.	Maimone NM, Apaza-Castillo GA, Quecine MC, de Lira SP.	Braz J Microbiol	10.1007/s42770-024-01286-1	2024
	Anti-Fungal Activity of Moutan cortex Extracts against Rice Sheath Blight (Rhizoctonia solani) and Its Action on the Pathogen's Cell Membrane.	Zhao Y, Wang X, Zhang L, Wang K, Wu Y, Yao J, Cui B, Chen Z.	ACS Omega	10.1021/acsomega.2c06150	2022
	Streptomyces polyketides mediate bacteria-fungi interactions across soil environments.	Krespach MKC, Stroe MC, Netzker T, Rosin M, Zehner LM, Komor AJ, Beilmann JM, Kruger T, Scherlach K, Kniemeyer O, Schroeckh V, Hertweck C, Brakhage AA.	Nat Microbiol	10.1038/s41564-023-01382-2	2023
	"Microbial Wars" in a Stirred Tank Bioreactor: Investigating the Co-Cultures of Streptomyces rimosus and Aspergillus terreus, Filamentous Microorganisms Equipped With a Rich Arsenal of Secondary Metabolites.	Boruta T, Scigaczewska A, Bizukojc M.	Front Bioeng Biotechnol	10.3389/fbioe.2021.713639	2021
Pathogenicity	Oligomycins inhibit Magnaporthe oryzae Triticum and suppress wheat blast disease.	Chakraborty M, Mahmud NU, Muzahid ANM, Rabby SMF, Islam T.	PLoS One	10.1371/journal.pone.0233665	2020
	Biomolecules of 2-Thiouracil, 4-Thiouracil and 2,4-Dithiouracil: A DFT Study of the Hydration, Molecular Docking and Effect in DNA:RNAMicrohelixes.	Alcolea Palafox M, Franklin Benial AM, K Rastogi V.	Int J Mol Sci	10.3390/ijms20143477	2019
Metabolism	Microbial formation of 4-thiouracil.	Dolak L, Sokolski WT, Mizsak S, Stroman DW, Sebek OK.	Antimicrob Agents Chemother	10.1128/aac.11.3.569	1977
Phylogeny	Description of Streptomyces explomaris sp. nov., isolated from the coastal soil rhizosphere of Juniperus excelsa and reclassification of Streptomyces libani as a later heterotypic synonym of Streptomyces nigrescens.	Shu W, Ruckert-Reed C, Gromyko O, Tistechok S, Kalinowski J, Luzhetskyy A, Wittmann C.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006711	2025
	Genomic and Phenotypic Characterization of Streptomyces sirii sp. nov., Amicetin-Producing Actinobacteria Isolated from Bamboo Rhizospheric Soil.	Zakalyukina YV, Alferova VA, Nikandrova AA, Kiriy AR, Chernyshova AP, Kabilov MR, Baturina OA, Biryukov MV, Sergiev PV, Lukianov DA.	Microorganisms	10.3390/microorganisms12122628	2024
	Streptomyces lydicamycinicus sp. nov. and Its Secondary Metabolite Biosynthetic Gene Clusters for Polyketide and Nonribosomal Peptide Compounds.	Komaki H, Hosoyama A, Igarashi Y, Tamura T.	Microorganisms	10.3390/microorganisms8030370	2020

References

#9638	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40555
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Streptomyces libani subsp. libani (DSM 40555, ATCC 23732, CBS 753.72)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_027497475

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media